Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B14
         (1278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...   171   7e-43
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    62   1e-09
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    56   5e-08
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    56   5e-08
U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    34   0.19 

>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score =  171 bits (417), Expect = 7e-43
 Identities = 78/107 (72%), Positives = 97/107 (90%)
 Frame = +1

Query: 289 ILNLVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYV 468
           +++LVQQA NYKQL+KGA  ATK LNRG+SE+I+MAADAEPLEI+LH+P+LCE KNVPYV
Sbjct: 22  LMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYV 81

Query: 469 FVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIERLLV 609
           FVRSK ALGRACGV+RP+I+ SIT NEGSQLK QIQ I++++E+LL+
Sbjct: 82  FVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 31/96 (32%), Positives = 48/96 (50%)
 Frame = +1

Query: 322 KQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALGRA 501
           K LR+G     K L R    + I+A +  P+++  HIP +CE K +PYV++ S++ LG A
Sbjct: 67  KTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLA 126

Query: 502 CGVSRPIISCSITINEGSQLKPQIQTIQQEIERLLV 609
            G  RP  S  I +      K     + + +  L V
Sbjct: 127 VGHRRP--SILIFVKPSGDFKELYDEVAEALRHLTV 160


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 23/56 (41%), Positives = 35/56 (62%)
 Frame = +1

Query: 328 LRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALG 495
           +R G    T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 137 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 23/56 (41%), Positives = 35/56 (62%)
 Frame = +1

Query: 328 LRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVRSKQALG 495
           +R G    T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 117 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 298 LVQQAXNYKQLRKGAXXATKXLNRGLSELIIMAADAEPLEIVLHIPILCEXKNVPYVFVR 477
           +++ A +   L KG     K L++  +   ++A + +  + V  +  LC    +P + V 
Sbjct: 29  VLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVA 88

Query: 478 SKQALGRACGVSR 516
            K+ +G  CG+ +
Sbjct: 89  DKKIIGEYCGLCK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,810
Number of Sequences: 27780
Number of extensions: 225706
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)