Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B12
(1167 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 108 1e-23
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 108 1e-23
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 104 1e-22
07_01_0243 - 1783903-1784658 29 7.1
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 29 7.1
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 29 9.3
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 29 9.3
01_06_1261 - 35826513-35828941,35829201-35829294 29 9.3
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 108 bits (259), Expect = 1e-23
Identities = 55/107 (51%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Frame = +1
Query: 655 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 834
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 835 YGIHKLQISCVVEDDKVPIDWLTEE---IEKNEDYVQSVDXAAXXKV 966
YGI KLQI + DD V +D L E+ E +Y+QS D A K+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 108 bits (259), Expect = 1e-23
Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 3/107 (2%)
Frame = +1
Query: 655 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 834
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 835 YGIHKLQISCVVEDDKVPIDWLTEE---IEKNEDYVQSVDXAAXXKV 966
YGI KLQI + DD V +D L E+ E +++QS D A K+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 104 bits (250), Expect = 1e-22
Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 3/101 (2%)
Frame = +1
Query: 673 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 852
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 853 QISCVVEDDKVPIDWLTEE---IEKNEDYVQSVDXAAXXKV 966
QI + DD V +D L EE E ++VQS D A K+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 7.1
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 479 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 598
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 313 VAKARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVR 492
+A AR ++ E A L TEL + L+ +N++ + AI D+ L+I + R
Sbjct: 305 IATARDSLRQREEAKKKQAEL-----TELENEATELKQKNEEERVAIQDMEALLIKRRRR 359
Query: 493 VE 498
VE
Sbjct: 360 VE 361
>05_07_0093 -
27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 328 QHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRN 468
+ ++ ++ M++ A + + ++ L NEN+ LK IDDL++
Sbjct: 421 EKLRREMKMMEAALQGAARQSQSKADEIARLMNENEQLKSTIDDLKS 467
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 28.7 bits (61), Expect = 9.3
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +1
Query: 658 LAAYNAKKAKKPVLIAKS---NIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVP 828
L NA PV+ + I+ + P +D T +L + + D L+ L
Sbjct: 158 LEQQNADIPGNPVIFGPNFMAQILYHLSPQEDLTLGLSLIRPTNKFTGDALMRDPGLLTK 217
Query: 829 LAYGIHKLQISCVVEDDK-VPIDWLTEEIEKNEDYVQSVDXA 951
YG + ++ VVEDD+ +P+++ I +N V+ VD A
Sbjct: 218 ERYGSTR-RVFVVVEDDRGIPVEFQRRMIAENPG-VEVVDFA 257
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.7 bits (61), Expect = 9.3
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 319 KARQHIKNSLECMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVE 498
K +Q ++S E S LAG + E+ KVISLE I+ ++N LQ R++
Sbjct: 311 KVKQKFESSSEA--SAVHLAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLD 367
Query: 499 TLE 507
+LE
Sbjct: 368 SLE 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,846,403
Number of Sequences: 37544
Number of extensions: 367560
Number of successful extensions: 829
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3561544780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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