Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B12
         (1167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   139   4e-33
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   130   2e-30
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    31   2.1  
AF106583-4|AAD03135.1|  417|Caenorhabditis elegans Hypothetical ...    29   6.3  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  139 bits (336), Expect = 4e-33
 Identities = 85/194 (43%), Positives = 105/194 (54%), Gaps = 1/194 (0%)
 Frame = +1

Query: 388 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLEXXXXXXXXXXXXEKPAAAST 567
           N E    V  L  E+  L K +DDL +LV  LQ+++ TL               PAAA  
Sbjct: 72  NKEGGEDVSKLREEHSALAKKVDDLASLVAELQLQLSTLRQGQTSSVAAPAAA-PAAAKE 130

Query: 568 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAAYNAKKAKKPVLIAKSNIILDVKPWDDE 747
                                        RLAAY AKKA K   IAKS++ILDVKPWDDE
Sbjct: 131 EAAGDDDFDLFGSEDEEEDEEKKKVVEE-RLAAYAAKKATKAGPIAKSSVILDVKPWDDE 189

Query: 748 TDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVPIDWLTEEIEKN-E 924
           TD+  +E+ VRSI  DGL+WG AKL+P+ YGI KLQI  V+ED KV +D L E+I  + E
Sbjct: 190 TDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFE 249

Query: 925 DYVQSVDXAAXXKV 966
           D+VQSVD  A  K+
Sbjct: 250 DHVQSVDIVAFNKI 263


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  130 bits (314), Expect = 2e-30
 Identities = 65/105 (61%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
 Frame = +1

Query: 655 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 834
           RLAAY  KKAKK   IAKS++ILDVKPWDDETD+  +E+ VRSI  DGL+WG AKL+P+ 
Sbjct: 109 RLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIG 168

Query: 835 YGIHKLQISCVVEDDKVPIDWLTEEIEKN-EDYVQSVDXAAXXKV 966
           YGI KLQI  V+ED KV +D L E+I  + ED+VQSVD  A  K+
Sbjct: 169 YGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213


>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 808 GAAKLVPLAYG-IHKLQISCVVE-DDKVPIDWLTEEIEKNEDY 930
           G  K  P A G I +  +SC+ E DD V  +WL E IE+ EDY
Sbjct: 288 GLKKYAPGALGPILETLLSCMTEMDDDVLNEWLNE-IEEEEDY 329


>AF106583-4|AAD03135.1|  417|Caenorhabditis elegans Hypothetical
           protein F23C8.7 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 778 RSISTDGLLWGAAKLVPLAYGIHKLQISCVVE-DDKVPIDWLTEEIEKNEDYVQSVDXAA 954
           R I+    L+G  ++    +G+ +  IS V++   KVPI WL  E  K   Y    D  A
Sbjct: 244 RDIAARNCLYGGGQVKIADFGLSREGISYVMDLTKKVPIRWLAPETLKAGIYSPKTDVFA 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,733
Number of Sequences: 27780
Number of extensions: 352232
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)