Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B10
         (1181 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    28   0.16 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.4  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
 Frame = +3

Query: 750 IMHRDVKPHNVMIDHEHRMLRLIDWGLAEFYHPGQDYNVRVASXYFKGPEL-----LVXY 914
           ++HRD+   NV++   H  +++ D+GL+   +  QD NV   +   K P        + +
Sbjct: 613 VVHRDLAARNVLVCENH-TVKVSDFGLSRDVY--QD-NVYCKNGGGKLPVRWMALESLTH 668

Query: 915 QMYDYXLDMWSLGCMLASMI 974
           Q Y    D+WS G +L  ++
Sbjct: 669 QRYTTYSDVWSFGVLLWEIV 688


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 90  PSKTYKMDAQPSPSQS 43
           P   Y++ AQP+PSQS
Sbjct: 330 PPPPYQISAQPTPSQS 345


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 856 IIMFVLLLXTLRALNFWXII 915
           ++ F + L   RAL FW I+
Sbjct: 298 VLAFFICLLPFRALTFWIIV 317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,907
Number of Sequences: 336
Number of extensions: 4738
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34537495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)