Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B09
(1239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical p... 48 1e-05
Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical p... 48 1e-05
AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical ... 43 5e-04
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 33 0.55
Z67995-4|CAO78723.1| 233|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical pr... 29 9.0
Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical pr... 29 9.0
U41109-17|AAO12426.1| 726|Caenorhabditis elegans Hypothetical p... 29 9.0
U41109-15|AAZ91354.1| 819|Caenorhabditis elegans Hypothetical p... 29 9.0
U41109-14|AAO12423.1| 840|Caenorhabditis elegans Hypothetical p... 29 9.0
AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear recep... 29 9.0
AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear recep... 29 9.0
AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear recep... 29 9.0
AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical ... 29 9.0
>Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical
protein F43G9.2b protein.
Length = 142
Score = 48.4 bits (110), Expect = 1e-05
Identities = 18/49 (36%), Positives = 34/49 (69%)
Frame = +2
Query: 326 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVT 472
FIE +V+ GDTL +A+++ ++AE+KR+N + + + A +K+PV+
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVS 87
>Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical
protein F43G9.2a protein.
Length = 209
Score = 48.4 bits (110), Expect = 1e-05
Identities = 18/49 (36%), Positives = 34/49 (69%)
Frame = +2
Query: 326 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVT 472
FIE +V+ GDTL +A+++ ++AE+KR+N + + + A +K+PV+
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVS 87
>AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical
protein B0041.3 protein.
Length = 158
Score = 42.7 bits (96), Expect = 5e-04
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 281 GRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIK 460
G + Q + P + I QVQ DTL+ IAL+ CS++ L R N++ + +F ++ I+
Sbjct: 33 GTTQSQSSPVTPCSYTIY-QVQTDDTLERIALKHNCSVSSLVRANKLWSPSALFMKQFIR 91
Query: 461 VPV 469
+P+
Sbjct: 92 IPI 94
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 32.7 bits (71), Expect = 0.55
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = -2
Query: 650 QHCSQWHSLSPLFAVNCFDVTAVC------HCFVRVAVSILAFVSRLKVSALVALMVLTL 489
+HC HS+SPL A +C V VC HC AV + F R V+A++ L ++TL
Sbjct: 103 KHCHSCHSMSPLRAHHC-PVCDVCILRRDHHCSFG-AVCVGHFNQRYFVAAVINLFIMTL 160
>Z67995-4|CAO78723.1| 233|Caenorhabditis elegans Hypothetical
protein M153.5 protein.
Length = 233
Score = 29.1 bits (62), Expect = 6.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 649 CYYEQHFSVF-CCS-LFGRRTSRTSHRGHAIVAKQRKDSCRSYSCERIDITWC 801
C + F++ CCS F RR+S +S + + +V + +D ++ +R WC
Sbjct: 69 CANDPDFALIQCCSSCFDRRSSLSSEKYNLVVRRHLEDPMKATCIDRRGGDWC 121
>Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical
protein W01D2.2b protein.
Length = 415
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 685 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 768
S++ RT H G +VAK+++++CRS
Sbjct: 57 SIWKNRTYACRHGGKCLVAKEQRNACRS 84
>Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical
protein W01D2.2a protein.
Length = 412
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 685 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 768
S++ RT H G +VAK+++++CRS
Sbjct: 57 SIWKNRTYACRHGGKCLVAKEQRNACRS 84
>U41109-17|AAO12426.1| 726|Caenorhabditis elegans Hypothetical
protein F52E1.13d protein.
Length = 726
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 341 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 469
+ E DTL+ +A C++ EL ++N++ +F + I VP+
Sbjct: 26 ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67
>U41109-15|AAZ91354.1| 819|Caenorhabditis elegans Hypothetical
protein F52E1.13c protein.
Length = 819
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 341 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 469
+ E DTL+ +A C++ EL ++N++ +F + I VP+
Sbjct: 5 ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 46
>U41109-14|AAO12423.1| 840|Caenorhabditis elegans Hypothetical
protein F52E1.13a protein.
Length = 840
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 341 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 469
+ E DTL+ +A C++ EL ++N++ +F + I VP+
Sbjct: 26 ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67
>AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 685 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 768
S++ RT H G +VAK+++++CRS
Sbjct: 63 SIWKNRTYACRHGGKCLVAKEQRNACRS 90
>AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 415
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 685 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 768
S++ RT H G +VAK+++++CRS
Sbjct: 60 SIWKNRTYACRHGGKCLVAKEQRNACRS 87
>AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear receptor
NHR-61 protein.
Length = 418
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 685 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 768
S++ RT H G +VAK+++++CRS
Sbjct: 60 SIWKNRTYACRHGGKCLVAKEQRNACRS 87
>AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical
protein Y37E3.3 protein.
Length = 67
Score = 28.7 bits (61), Expect = 9.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 326 FIEAQVQEGDTLQAIALRFYC 388
F++++ EGD L A+ LR YC
Sbjct: 24 FLQSEYSEGDALDALGLRRYC 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,711,117
Number of Sequences: 27780
Number of extensions: 376617
Number of successful extensions: 971
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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