Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B08
(1242 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.42
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.42
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.42
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.0
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 3.0
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 3.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 9.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 9.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 9.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.42
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = +2
Query: 701 GAXXRXXVTTXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGX 880
G+ +T P P P L P G P P G P++ G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP---PPPPPPGGLPPISGGP 758
Query: 881 DPPPGXXGDSXPPPXXP 931
PPP G PPP P
Sbjct: 759 PPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.42
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = +2
Query: 701 GAXXRXXVTTXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGX 880
G+ +T P P P L P G P P G P++ G
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP---PPPPPPGGLPPISGGP 758
Query: 881 DPPPGXXGDSXPPPXXP 931
PPP G PPP P
Sbjct: 759 PPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.42
Identities = 21/77 (27%), Positives = 25/77 (32%)
Frame = +2
Query: 701 GAXXRXXVTTXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGX 880
G+ +T P P P L P G P P G P++ G
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP---PPPPPPGGLPPISGGP 341
Query: 881 DPPPGXXGDSXPPPXXP 931
PPP G PPP P
Sbjct: 342 PPPPPPPGGCPPPPPPP 358
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 728 TXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGXDPPPGXXGD 907
T ++ P P P S P + P P P G D PPG G
Sbjct: 208 TPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP---GPDGPPGVDGQ 264
Query: 908 SXPP-PXXPXG 937
S PP P P G
Sbjct: 265 SGPPGPPGPAG 275
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 728 TXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGXDPPPGXXGD 907
T ++ P P P S P + P P P G D PPG G
Sbjct: 203 TPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP---GPDGPPGADGQ 259
Query: 908 SXPP-PXXPXG 937
S PP P P G
Sbjct: 260 SGPPGPPGPAG 270
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 728 TXSLPXPXXPXXPXXVXXSXXXKXLAPXXGXXXEXPXXPHRXGXXPVTXGXDPPPGXXGD 907
T ++ P P P S P + P P P G D PPG G
Sbjct: 203 TPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAP---GPDGPPGADGQ 259
Query: 908 SXPP-PXXPXG 937
S PP P P G
Sbjct: 260 SGPPGPPGPAG 270
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 833 PXXPHRXGXXPVTXGXDPPPGXXGDSXPPPXXPXGN 940
P P P G PPP G S PPP P G+
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGS 306
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 833 PXXPHRXGXXPVTXGXDPPPGXXGDSXPPPXXPXGN 940
P P P G PPP G S PPP P G+
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGS 327
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 833 PXXPHRXGXXPVTXGXDPPPGXXGDSXPPPXXPXGN 940
P P P G PPP G S PPP P G+
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAG-SPPPPPPPRGS 312
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,267
Number of Sequences: 27780
Number of extensions: 242230
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3443371140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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