Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_B05
(1226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 34 0.26
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 33 0.46
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 33 0.61
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 32 1.1
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 31 1.4
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 1.9
05_06_0278 + 26894802-26895362 31 2.4
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 30 3.2
07_03_0544 + 19309026-19310105 30 4.3
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 29 5.7
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 29 5.7
05_07_0162 + 28090579-28091343 29 5.7
11_01_0752 - 6327269-6327764,6328571-6328839 29 9.9
03_06_0516 - 34461975-34463456 29 9.9
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 33.9 bits (74), Expect = 0.26
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 448 PAASKAHTGPAGGATHRPAHS--GGGTPSRTLARTSSPGALISGALTSLTLP 299
PA+S + + + AT PA G GTP+ T+ PGA + G T+ T+P
Sbjct: 263 PASSPSGSQKSTTATPTPAAMMPGTGTPTTPTTATAMPGATMPGTATATTMP 314
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 33.1 bits (72), Expect = 0.46
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -2
Query: 448 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGM 284
PA++ + + PA G+ P+ + PS SSP A + + + LT P +VG+
Sbjct: 27 PASNNSSSPPAPGSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVVGI 81
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 32.7 bits (71), Expect = 0.61
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -2
Query: 511 YVLSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGAL 332
+V+S+HE S R++ V + A S+ + G R H G P + G++
Sbjct: 492 HVISKHEKESHEPRISAVNSHDAPSE-NADMEKGRKPRQIHDGQSAPQAS-------GSV 543
Query: 331 ISGALTSLTLPNLVGMNGRLAQSAFIHT 248
S AL+SL +P+L G +HT
Sbjct: 544 SSPALSSLIIPSLKEATGDKFNGPVVHT 571
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 31.9 bits (69), Expect = 1.1
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -2
Query: 535 TPKLVTA*YVLSRHETASSSHRVANVLA-VPAASKAHTGPAGGATHRPAHSGGGTPSRTL 359
TP L A + H AS S VA + AA G G + HRP P L
Sbjct: 120 TPNLADARGLQRYHRQASQSAAVATTCSRCVAADATGCGSLGASRHRPWRPRAAAPRSAL 179
Query: 358 ARTSSPGALISGALTSLTLP 299
AR++ G + + A ++ LP
Sbjct: 180 ARSTFRG-VRADATPAVQLP 198
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 31.5 bits (68), Expect = 1.4
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 357 ARVREGVPP--PLCAGRCVAPPAGPVCAFDAAGTARTFATL-CELEAV--SCRESTYYAV 521
AR+R +PP P CA R PP P A D A + T AT+ + AV CR + AV
Sbjct: 140 ARMRPILPPNIPRCASRRQPPPQCPAAAADDAPSTSTAATVKRQRNAVLTRCRSDSRLAV 199
Query: 522 TSLG 533
G
Sbjct: 200 RGGG 203
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 502 SRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 344
S TA+++ A AAS A TG A +P SGG T +L SS
Sbjct: 121 SSSATAAAAAAGAGTAGSTAASSASTGNAASTAAKPTASGGATHRLSLISASS 173
>05_06_0278 + 26894802-26895362
Length = 186
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 285 IPTRLGSVKEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAG 422
+PT G ++P + PG+L R+ G PPP + R V P AG
Sbjct: 52 LPTDDGEAVAAASPGLDVPGQLGRS---GGAPPPPQSNRPVTPLAG 94
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 496 HETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 344
H +A V +VP AS A + A GAT R HS G T +A++++
Sbjct: 248 HISAGQVKIAEPVFSVPLASTATSHSATGATDRDYHSLGSTNPLPIAKSTN 298
>07_03_0544 + 19309026-19310105
Length = 359
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 305 RQRSQRTGYESPG*AGPSEGPRGGATAAVCRAVRGPAG 418
+ + R+G +PG GP GGA AAV A G AG
Sbjct: 100 KNKRSRSGGAAPGGGVGRGGPGGGAAAAVSSAGGGAAG 137
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 299 GERQRSQRTGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSVR 433
G + S G+++PG A PS P GGA+ PA T R
Sbjct: 56 GSKSGSTTPGHQTPGVAWPSPYPSGGASPLPAGVSPSPARSTPRR 100
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 448 PAASKAHTGPAGGATHRPAHSGGGT--PSRTLARTSSPGALISG 323
P AS H+G GG + GGG+ P LA + +P A SG
Sbjct: 64 PTASTKHSGSGGGGGAASNNGGGGSAPPPGNLAGSGTPPAKGSG 107
>05_07_0162 + 28090579-28091343
Length = 254
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 381 PPLCAGRCVAPPAGPV 428
PPL GRCV PP PV
Sbjct: 52 PPLAGGRCVGPPLYPV 67
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.7 bits (61), Expect = 9.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 329 YESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSVRL*CSRNGE 457
+ SP G PR G A AV G AGR + RL S G+
Sbjct: 103 HASPPTGGSPRPPRSGGGDATSAAVGGGAGRGAARLLPSTRGD 145
>03_06_0516 - 34461975-34463456
Length = 493
Score = 28.7 bits (61), Expect = 9.9
Identities = 24/56 (42%), Positives = 29/56 (51%)
Frame = +1
Query: 247 LYG*KPTAPVYRSFQRDWGASKKSAHRI*EPRVSWSERGSARGCHRRCVQGGAWPR 414
L G PT P R + ASK +A + PRV + G G HRR V+GGA PR
Sbjct: 358 LLGLLPTCPFGR-----YAASKFAA--LLPPRVEQAVLGD--GEHRRAVEGGAHPR 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,404,741
Number of Sequences: 37544
Number of extensions: 582429
Number of successful extensions: 2005
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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