Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B01
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    40   5e-04
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    29   1.3  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   5.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    27   5.1  
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    26   9.0  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   9.0  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   9.0  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   9.0  

>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 21/82 (25%), Positives = 40/82 (48%)
 Frame = +1

Query: 388 YEDEYDECTSFRARFHQYFIFGETLDCNQWKKDYDNCCKWESKKDVKAAEALINSEKTRR 567
           Y D+   C +  ++ + Y+ +GE   C    KD+  C   +SK   +A E L      + 
Sbjct: 39  YFDQMAMCLTVFSQMNHYYRYGEYNRCKGNFKDFKWCLSTKSKAHEEAQEGLRKRRLQQW 98

Query: 568 LERLKGHYNNSIWKKRSAPPAN 633
           ++  +G  +  IWK R++P ++
Sbjct: 99  MKFRQGPNSEDIWKMRTSPKSS 120


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +1

Query: 463 DCNQWKKDYD-NCCKWESKKDVKAAEALINSEKTRRLERLKGHYNNSIWKKRSAPPANWD 639
           D  +WKK  + +  +W+  ++   AE     E+ +   +     + + WKK       W 
Sbjct: 128 DKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWR 187

Query: 640 KPLPEWMSKRDE 675
             + EW    DE
Sbjct: 188 NSMDEWRKSMDE 199


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 547 NSEKTRRLERLKGHYNNSIWKK--RSAPPANWDKP-LPEWMSKRDENTYLALKAKEFREG 717
           + EKT   E     Y + + +   +S+    W +P LP    ++D+  +  + ++EF EG
Sbjct: 52  SKEKTSSFEDELAEYASQLDQDEIKSSKDQQWQRPALPAINPEKDDIYFQQIDSEEFTEG 111

Query: 718 NVKEEKSF 741
           +V   + F
Sbjct: 112 SVPSIRLF 119


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 613 RSAPPANWDKPLPEWMSKRDENTYLALKAKEFREGNVKEEKSFCS 747
           +S  PA+ D    +WM+K    T LALK K  ++  V E   +C+
Sbjct: 75  KSTDPADLDAFNIDWMNKYRGKTQLALKPKTTQQ--VSEILKYCN 117


>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 607 KKRSAPPANWDKPLPEWMSKRDENT-YLALKAKEFR 711
           K++ A  A  ++P+P+W+  R  NT +  +K + +R
Sbjct: 10  KQKLAKAARQNRPIPQWIRLRTGNTVHYNMKRRHWR 45


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 250 NKNIKMTDNNRRNEKNESEIHKESINTSNTTESQLEDK 363
           NKN +++   R+ E N  E    S + S+  ES  ED+
Sbjct: 129 NKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDE 166


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 631 NWDKPLPEWM 660
           NWD P+PEW+
Sbjct: 454 NWDPPVPEWL 463


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 361 KWMIRNCDIYEDEYDECTSFRARFHQYFIFGETLDCNQWK 480
           +W+IR   I+E   DE       FH +  F   L C++ K
Sbjct: 115 EWLIRRFSIHEYVSDEFILSFLPFHDHPFFARILGCSKPK 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,141
Number of Sequences: 5004
Number of extensions: 49617
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)