Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B01
         (1191 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         29   0.27 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   3.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   5.7  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 511  SKKDVKAAEALINSEKTRRLERLKGHYNNSIWKKRSAPPANWDKPLP--EWMSKRDENTY 684
            S  D + AE    +E+  R ER K H  ++I ++ S     W++PL    W SK DE+  
Sbjct: 1449 SPSDRQCAEEREQAEQ--RFERQKNHTKDTIRQQGSL--VRWNEPLSVSHWRSKLDESEA 1504

Query: 685  LALKA 699
              L A
Sbjct: 1505 ATLGA 1509


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 505 WESKKDVKAAEALINSEKTRRLERLKGHYNNSIWKKRSAPP 627
           WE     K A   +  +  R+LE LK    + + K R+APP
Sbjct: 460 WELPDGSKRARIRLPVKSARQLEGLKLFLCDCVSKVRAAPP 500


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 292  KNESEIHKESINTSNTTESQLEDKWMIRNC-DIYEDEY 402
            +NE+E  K     S  T +  +  + +RNC  IY +E+
Sbjct: 3118 ENENEFDKRVSMISAPTRNMAKSAFSLRNCYKIYSEEH 3155


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 641,073
Number of Sequences: 2352
Number of extensions: 12455
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 134886510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)