Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_B01
         (1191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-16|CAH60778.1|  402|Caenorhabditis elegans Hypothetical...    32   0.69 
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    29   8.5  

>AL117207-16|CAH60778.1|  402|Caenorhabditis elegans Hypothetical
           protein Y60A3A.24 protein.
          Length = 402

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 517 KDVKAAEALI-NSEKTRRLERLKGHYNNSIWKKRSAPPANWDKPLPEWMSKRDENTYLAL 693
           K++K  E  I N  ++++ E+        I++K       WDK + +W +K +E     +
Sbjct: 253 KNLKKIEKEIENISESKKAEKYNDKDYQKIFQKHKIAKDEWDKTISDWKNKEEEAEKQGV 312

Query: 694 KAKEFREGNVKEEKSFCSI 750
                     K+ K+F +I
Sbjct: 313 TVGTLATRKTKKAKAFHTI 331


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 439 YFIFGETLDCNQWKKDYDNCCKWESKKDVKAAEALINSEKTRRLE 573
           + I G  + C     + DN C  +++KDV  A+  +    T  LE
Sbjct: 112 FLILGAVIACIYLSDNNDNICNPDNQKDVTTAKGCVPKMTTGELE 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,476,611
Number of Sequences: 27780
Number of extensions: 272493
Number of successful extensions: 1070
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)