Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A21
(1200 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 377 e-105
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 374 e-104
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 152 8e-38
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 84 4e-17
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 1.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 5.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 6.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 9.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 377 bits (928), Expect = e-105
Identities = 170/222 (76%), Positives = 190/222 (85%)
Frame = -3
Query: 853 DIERPTYTNLNXXIGQIVSSITAXLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIX 674
DIERPTY NLN I Q+VSSITA LRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVS 281
Query: 673 AEKAYHEQLSVAEITNACXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAXATIKT 494
A KA+HE SV EITN C EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA +IK+
Sbjct: 282 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKS 341
Query: 493 KRTIQXVDWCPTGFKVGIXYQPPXVVPGGDLAKVQRAVCMLSNTTAXAEAWAXLDHKXDL 314
+RTIQ VDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+ AEAW+ LDHK DL
Sbjct: 342 RRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDL 401
Query: 313 MYAKRAXVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 188
MY+KRA VHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
Score = 41.1 bits (92), Expect = 3e-04
Identities = 21/45 (46%), Positives = 22/45 (48%)
Frame = -2
Query: 992 PAPQVXXXXXGALQFYXXPXHTTLEXXXCAFMVDNEAIYDXCXRN 858
PAPQV H TL+ C FMVDNEA YD C RN
Sbjct: 177 PAPQVSTSVVEPYNSVLTT-HATLDNSDCTFMVDNEACYDICRRN 220
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 374 bits (920), Expect = e-104
Identities = 169/222 (76%), Positives = 189/222 (85%)
Frame = -3
Query: 853 DIERPTYTNLNXXIGQIVSSITAXLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIX 674
DIERP+Y NLN I Q+VSSITA LRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVS 277
Query: 673 AEKAYHEQLSVAEITNACXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAXATIKT 494
A KA+HE SV EITN C EP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA TIK
Sbjct: 278 AAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKA 337
Query: 493 KRTIQXVDWCPTGFKVGIXYQPPXVVPGGDLAKVQRAVCMLSNTTAXAEAWAXLDHKXDL 314
KRTIQ VDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+ AEAW+ LDHK DL
Sbjct: 338 KRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDL 397
Query: 313 MYAKRAXVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 188
MY+KRA VHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 39.9 bits (89), Expect = 7e-04
Identities = 20/45 (44%), Positives = 22/45 (48%)
Frame = -2
Query: 992 PAPQVXXXXXGALQFYXXPXHTTLEXXXCAFMVDNEAIYDXCXRN 858
PAPQV H TL+ C FMVDNE+ YD C RN
Sbjct: 173 PAPQVSTSVVEPYNSVLTT-HATLDLADCTFMVDNESCYDICRRN 216
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 152 bits (369), Expect = 8e-38
Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 3/223 (1%)
Frame = -3
Query: 850 IERPTYTNLNXXIGQIVSSITAXLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIXA 671
I+ P+Y +LN + +++ +T RF G LN DL + N+VP+PR+HF +V +AP+
Sbjct: 217 IKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAI 276
Query: 670 EKAYHEQLSVAEITNACXEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAXATIKTK 491
+ + +SV E+T + N MV DPRHG+Y+ L+RG V K+V+ +++TK
Sbjct: 277 GSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTK 336
Query: 490 RTIQXVDWCPTGFKVGIXYQPPXVVPGGDLAKVQRAVCMLSNTTAXAEAWAXLDHKXDLM 311
+ V+W P + PP DL + + + N+T+ E + L + M
Sbjct: 337 NSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAM 388
Query: 310 YAKRAXVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 191
+ ++A +HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 389 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 83.8 bits (198), Expect = 4e-17
Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 7/221 (3%)
Frame = -3
Query: 847 ERPTYTNLNXXIGQIVSSITAXLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVI--- 677
+ PT+ N + ++S+ T LR+ G +N DL +L+P PR HF L +Y P
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ 280
Query: 676 XAEKAYHEQLSVAEITNACXEPANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAXATI 500
E + +V ++ P NQMV +P + +++ + +G+ P DV+ + I
Sbjct: 281 VEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRI 340
Query: 499 KTKRTIQXVDWCPTGFKVGIXYQPPXVVPGGDLAKVQRAVCMLSNTTAXAEAWAXLDHKX 320
+ +R + W P +V + + P + ++ + ML+N T+ A + +
Sbjct: 341 RERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQY 395
Query: 319 DLMYAKRAXVHWYVGEGMEE---GEFSEAREDLAALEKDYE 206
D + + A + Y E + E EF +R+ +A L +YE
Sbjct: 396 DRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 546 VVTXYPRM*TRPXLPSKPSVLSNXSTGVQPVSRSVSXTSHPPWCP 412
VV P + RP +P P LS V PV+ V PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 506 SXGRVHILGYXVTTVQHTASHVLAMTGVAFHHLVGGLXACVCDLGXGK 649
S G +LGY ++ A++V+A + V HL+ G D K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 6.8
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 342 GLALTTSXTSCTPSVLXCTGTSVRVWRRESFPKPVRTWLPS--RRITKKSAWTPLKARVR 169
G+ TS TS T S S++ S P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 168 EPKSTK 151
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 513 PXLPSKPSVLSNXST--GVQPVSRSVSXTSHPPW 418
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,644,289
Number of Sequences: 5004
Number of extensions: 66136
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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