Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A20
         (1214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    71   2e-13
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.3  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   4.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   5.3  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
 Frame = +3

Query: 90  GXKGIKIAELFTKTIAATKGFDQNL-RKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGF 266
           G K +       +    T GFD ++   +++ S   G +    ++   HLN+ G LHGG 
Sbjct: 7   GTKVLSFVRSVWQDFVNTNGFDAHVVSDIQIISAVPGFVECSLKLQKHHLNRMGNLHGGC 66

Query: 267 IAHLVDAISTYALTTNENVDTRGVSIDLSLSF-YSAAKEGDNIEVEAKTRKTGKKIAFLE 443
           IA L D   + AL  +  +   GVSID++ +F  S    G +I + AK  + G  IAF  
Sbjct: 67  IAALTDLGGSLAL-ASRGLFISGVSIDMNQTFLQSGGTLGSSILLHAKCDRLGSNIAFTS 125

Query: 444 VEVRNKDKNQVLASGRHTKYI 506
           V+      N+V A GRHTK++
Sbjct: 126 VDFLT-SSNEVFAKGRHTKFV 145


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 177 VTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSL 356
           +   G GS+V  F    +    +  +HGGFI  ++D    + +  N      GV++ L  
Sbjct: 53  IEKSGKGSVVY-FHPTSDLCGYKNIVHGGFITTMLDEALAFGVFPN-FPSKMGVTVQLDT 110

Query: 357 SFYSAAKEGDNIEVEAKTRKT-GKK 428
           ++ + A      ++  KT K  G+K
Sbjct: 111 TYVAPALCSHLYKIVTKTTKVEGRK 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 321 VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 428
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 372 AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 473
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,278
Number of Sequences: 5004
Number of extensions: 41398
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)