Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A20
         (1214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical p...    75   8e-14
U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical p...    73   5e-13
L08403-2|AAA28024.2|  169|Caenorhabditis elegans Hypothetical pr...    71   1e-12
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    27   5.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    27   5.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    27   5.8  

>U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical
           protein C25H3.14 protein.
          Length = 143

 Score = 75.4 bits (177), Expect = 8e-14
 Identities = 38/118 (32%), Positives = 64/118 (54%)
 Frame = +3

Query: 147 GFDQNLRKLKVTSCGNGSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVD 326
           G+    R ++      G++  EF+V  +  NQ  TLHGG  A L+D  +T AL   +   
Sbjct: 23  GYAAGARNVRAVHAEEGNLRVEFEVEKDQTNQFETLHGGCTAALIDCFTTGALLLTKEAR 82

Query: 327 TRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTK 500
             GVS+DL +++ +AA  G+ + + +   K G+ + F + E+  K  N ++A+G HTK
Sbjct: 83  P-GVSVDLHITYLTAANIGETLVLNSTVIKQGRSLGFTKAELYRKRDNAMIATGVHTK 139


>U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical
           protein C25H3.3 protein.
          Length = 148

 Score = 72.5 bits (170), Expect = 5e-13
 Identities = 37/102 (36%), Positives = 61/102 (59%)
 Frame = +3

Query: 195 GSMVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAA 374
           G++  EF+V  +  N   TLHGG  + L+D  +T AL   +     GVS+DL +++ +AA
Sbjct: 39  GNLRVEFEVEKDQSNHFNTLHGGCTSTLIDIFTTGALLLTKPARP-GVSVDLHVTYLTAA 97

Query: 375 KEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTK 500
           K G+ + +++   K GK +AF + E+  K  N ++A+G HTK
Sbjct: 98  KIGETLVLDSTVIKQGKTLAFTKAELYRKSDNVMIATGVHTK 139


>L08403-2|AAA28024.2|  169|Caenorhabditis elegans Hypothetical
           protein F42H10.6 protein.
          Length = 169

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 37/99 (37%), Positives = 55/99 (55%)
 Frame = +3

Query: 201 MVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKE 380
           +V E  V  +HLN +GTLHGG  A L D I+  A+      D    S++L++S+    K 
Sbjct: 54  LVCEMVVQHQHLNSKGTLHGGQTATLTDVITARAVGVTVK-DKGMASVELAVSYLLPVKV 112

Query: 381 GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHT 497
           GD +E+ A   K G+ +AF + E R K   ++ A G+HT
Sbjct: 113 GDVLEITAHVLKVGRTMAFTDCEFRRKSDGKMSAKGKHT 151


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.1 bits (57), Expect(2) = 5.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 715 PPXXGSPPPPP 683
           PP  GSPPPPP
Sbjct: 295 PPPTGSPPPPP 305



 Score = 20.6 bits (41), Expect(2) = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 724 PXXPPXXGSPP 692
           P  PP  GSPP
Sbjct: 259 PPPPPPKGSPP 269


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.1 bits (57), Expect(2) = 5.7
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 715 PPXXGSPPPPP 683
           PP  GSPPPPP
Sbjct: 280 PPPTGSPPPPP 290



 Score = 20.6 bits (41), Expect(2) = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 724 PXXPPXXGSPP 692
           P  PP  GSPP
Sbjct: 244 PPPPPPKGSPP 254


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.1 bits (57), Expect(2) = 5.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 715 PPXXGSPPPPP 683
           PP  GSPPPPP
Sbjct: 274 PPPTGSPPPPP 284



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 724 PXXPPXXGSPP 692
           P  PP  GSPP
Sbjct: 238 PPPPPPKGSPP 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,186
Number of Sequences: 27780
Number of extensions: 276009
Number of successful extensions: 1449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3349461018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)