Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A19
         (1209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...   246   5e-66
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...   157   3e-39
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    33   0.11 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           28   3.0  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    27   4.0  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   9.1  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   9.1  

>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 497

 Score =  246 bits (602), Expect = 5e-66
 Identities = 130/296 (43%), Positives = 186/296 (62%), Gaps = 2/296 (0%)
 Frame = +2

Query: 128  YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 307
            Y+L+E + G++LF V   +++AA   +V+ S+ D+ +F  VV L +F P K+A  ALEN 
Sbjct: 4    YLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENA 63

Query: 308  NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALE-IQCTHTGAVPEI 484
            N +SEG+L + L  FLE  LPK  K+ K +LGV D  L  +I   ++ I+C  +    ++
Sbjct: 64   NDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDL 123

Query: 485  LRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKD 664
            LRGIR+H   L+K L+      AQLGLGHSYSRA+VKFNV+R DNMIIQ+IA+LDQLDKD
Sbjct: 124  LRGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKD 183

Query: 665  VNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEILGDSEK- 841
            +NTF+MR++EWYS+HFPEL  IV +N+ Y      + D+ T+ +E L  L  ++ D +  
Sbjct: 184  INTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDKTTINDEMLHDLAAVVDDDKDI 243

Query: 842  AQAIVDASKMSMGMDIHQLT*LTSKCLLAE**HSAIIENRFQNTWHSKMNXVXPNL 1009
            AQ+I++A K+SMG DI ++               +    +  N    KMN V PNL
Sbjct: 244  AQSIINAGKVSMGQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNL 299


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score =  157 bits (381), Expect = 3e-39
 Identities = 94/256 (36%), Positives = 153/256 (59%), Gaps = 2/256 (0%)
 Frame = +2

Query: 128 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENI 307
           ++L E +AG+A+F+  +  +L      + E +   +  + ++ L +F   +S + AL+N+
Sbjct: 2   FILTETAAGYAIFKAKD--KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDALDNV 59

Query: 308 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAVPE 481
           +A+ EG +   L+  LEG L   K     TL V DPKLG AI++   LE +     +V +
Sbjct: 60  SALVEGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSVQD 115

Query: 482 ILRGIRYHFHSLIKGLTLKACSVAQLGLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDK 661
           + RGIR H  SLI GL     +   LGL HS SR ++KF+  +VD MI+Q+IALLD LDK
Sbjct: 116 LYRGIREHLSSLISGLAPSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDK 175

Query: 662 DVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEILGDSEK 841
           ++NT++MR+REWY +HFPE+  I+ +N  Y +  + +   +T C E+    ++IL +  +
Sbjct: 176 ELNTYAMRVREWYGWHFPEMGKIIQDNLAYARVIKAM-GMRTKCSET--DFSDILPEEIE 232

Query: 842 AQAIVDASKMSMGMDI 889
           A  +  A+++SMG +I
Sbjct: 233 A-TLKSAAEISMGTEI 247



 Score = 33.5 bits (73), Expect = 0.060
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 877 GNGYSPVDLINIQMFAGRVVALSNYRKQISEYL 975
           G   +  DL NI M A +V+ L++YR Q+SEYL
Sbjct: 244 GTEITEEDLDNIVMLADQVLELASYRAQLSEYL 276


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 617 NMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 757
           ++I+ S ++  ++D ++      ++EWY   FPEL S+V     Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +2

Query: 617 NMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCE 796
           N +I+ I++  +  +  NTF  +I++   +  P    ++PE + ++ C    KD+K +  
Sbjct: 67  NELIREISVRGKYFRHANTFVEKIKDLI-FKTP----VIPETNFWSACKNLEKDKKVIVP 121

Query: 797 ESLEPLT 817
            + EPL+
Sbjct: 122 LA-EPLS 127


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +2

Query: 143 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 292
           HS G + FR+ + EEL   +   P+V +     Q + A   L+ F   K  IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -1

Query: 981 LCQVF*NLFSIIAECYYSASKHLDVNQVNW*ISIPMDIFEASTIACAFSESPRISVSGSN 802
           LC VF   F     C Y+  KH    +    +   MD  +A+ I    + S  + + G  
Sbjct: 84  LCDVFHLSFLYNPFCRYTFYKHFCGGETPQAVMATMDTLQAAGITSCLNYSREVDLDGDM 143

Query: 801 D 799
           D
Sbjct: 144 D 144


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/35 (25%), Positives = 24/35 (68%)
 Frame = +2

Query: 227 DLQRFNAVVTLIAFQPHKSAIVALENINAVSEGIL 331
           D++  NA++ L+   P++S ++  E++++  +G+L
Sbjct: 521 DVESQNAILLLLGCFPNQSPVLISESVSSYIQGVL 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,573,908
Number of Sequences: 5004
Number of extensions: 97153
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)