Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A18
         (1271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.26 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.34 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.34 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = -3

Query: 459  PPXXXPPXXXXXFPPPXPQSIXTKKXPPPXPPXXPK--PXKTPXHSSHTXP 313
            P    PP      PPP P S+      PP P   P   P   P  S+ + P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 421 PPPXPPINXXXKXPPPXPPXXXKTXKN 341
           PPP P      + PPP PP   K  KN
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKN 38



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = -3

Query: 444 PPXXXXXFPPPXPQSIXTKKXPPPXPPXXPK--PXKTPXHSSH 322
           PP      PPP P      + PPP PP   K    KTP  S +
Sbjct: 5   PPGNPPP-PPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGN 46



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 421 PPPXPPINXXXKXPPPXPP 365
           PPP PP       PPP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 466 PXPXXPXXPNXXXXFPPPXPPINXXXKXPPPXPP 365
           P P  P  P      PPP PP       PPP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/52 (32%), Positives = 19/52 (36%)
 Frame = -3

Query: 465 PHPPXXXPPXXXXXFPPPXPQSIXTKKXPPPXPPXXPKPXKTPXHSSHTXPA 310
           P P    PP      PPP P         PP PP  P P  +   S +  PA
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP-PPPPPPPAVSAGGSRYYAPA 796



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
 Frame = -2

Query: 502 PXXPPXXXXXXXPXPXXPXXPNXXXXFP-PPXPPINXXXKXPPPXPP 365
           P  P        P P     P      P PP PP       PPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -3

Query: 459 PPXXXPPXXXXXFPPPXPQSIXTKKXPPPXPP 364
           PP   PP       PP          PPP PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 451 PXXPNXXXXFPPPXPPINXXXKXPPPXPPXXXKTXKNPP 335
           P  P+     PP   P +     PPP PP    T  +PP
Sbjct: 231 PIPPSIPSSRPPERVP-SLSAPAPPPIPPPSNGTVSSPP 268



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -2

Query: 460 PXXPXXPNXXXXFPPPXPPINXXXKXPPPXPPXXXKTXKNPPTL 329
           P  P  P        P PP       PPP P     T + PP L
Sbjct: 337 PPPPPPPRSNAAGSIPLPP-QGRSAPPPPPPRSAPSTGRQPPPL 379


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +3

Query: 336 GGFLXVLXXXGGXGGGFFXXXLIGGXGGGXXXXXLGXXGXXGXG 467
           GGF       GG  GGF     +GG GGG      G  G  G G
Sbjct: 231 GGFEGGPGGFGGGPGGFGGG--LGGFGGGPGGFGGGPGGHGGPG 272


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = -3

Query: 465  PHPPXXXPPXXXXXFPPPXPQSIXTKKXPPPXPPXXPKPXKTP 337
            P P    PP       PP P+   +   PP  PP    P  TP
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPK--PSVGVPPVPPPSTAPPVPTP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,442
Number of Sequences: 5004
Number of extensions: 9536
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)