Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A16
         (1191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   7.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   7.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 855 CFFEIRRRSECGPHRVPX*LGALPRIXFPLVTY 953
           C  E+R++    P RV   +  + RI FP+  +
Sbjct: 443 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 475


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 855 CFFEIRRRSECGPHRVPX*LGALPRIXFPLVTY 953
           C  E+R++    P RV   +  + RI FP+  +
Sbjct: 429 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 461


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 855 CFFEIRRRSECGPHRVPX*LGALPRIXFPLVTY 953
           C  E+R++    P RV   +  + RI FP+  +
Sbjct: 463 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 495


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 855 CFFEIRRRSECGPHRVPX*LGALPRIXFPLVTY 953
           C  E+R++    P RV   +  + RI FP+  +
Sbjct: 412 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 444


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 202 PSRHYRSGLR 173
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 265 RWSCLWASGHQAGCRAPGSKAPSRHYR 185
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 265 RWSCLWASGHQAGCRAPGSKAPSRHYR 185
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 265 RWSCLWASGHQAGCRAPGSKAPSRHYR 185
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,373
Number of Sequences: 438
Number of extensions: 6805
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40608837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)