Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A12
         (1199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    86   1e-17
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    30   0.73 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   5.2  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    27   6.8  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   9.0  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 9/75 (12%)
 Frame = +1

Query: 253 IYYSQKYYDEEHEYRHVVLPKEMVKLVPKNH---------LMSEQEWRSIGVQQSQGWVH 405
           I+YS +Y D+E+EYRHV+LPK M+K +P ++         ++ E+EWR +G+ QS GW  
Sbjct: 25  IHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEM 84

Query: 406 YMTHQPEPHILLFRR 450
           Y  H PEPHILLF+R
Sbjct: 85  YEVHVPEPHILLFKR 99


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 253 IYYSQK-YYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGW 399
           IY SQ+ ++D          P++M  +VP ++ ++E+ W+ I +Q  QGW
Sbjct: 70  IYPSQQMFFDAMKRKNWNPHPEDMKTIVPIHNAVNERAWQDI-LQWEQGW 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 181 SN*GNRSLEIFLSRNLLRDIMSRDIYYSQKY 273
           SN  N S++ F  ++ + D+ S  +YY QKY
Sbjct: 389 SNLLNNSMKGFKGQSSVSDLYSERLYYKQKY 419


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
 Frame = +3

Query: 135 KGCDLNRIASNLRGRIKLRKPQLGNIFKSKSVA*HHVE---RHLLFPKIL*RRT*IQTCS 305
           K C  +   S+L  R+ +  PQ GN+  ++S      E   R  LF K +  RT  +   
Sbjct: 10  KSCFKSSQTSHLAARVAMENPQKGNVINAQSSRQPSSENEFRENLFFKEM--RTNGKNEH 67

Query: 306 TTKRDGKVSAKKPSNVRTRVAQHRCAAKSRLGALYDTSARTTYFIIPKEDNNTTRKK 476
            T     V  +   + +      +CA  S +    DT    T      ED +  RKK
Sbjct: 68  ETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKTALTKKYKSNEDVSRMRKK 124


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 808 NLLNQ---CPMPHCNISKISMPPI 870
           NLLN+   C M  CN   IS+PP+
Sbjct: 279 NLLNKDKPCSMDPCNFDGISIPPV 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,323,474
Number of Sequences: 5004
Number of extensions: 89714
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)