Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A12
         (1199 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of m...   109   3e-24
AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase...   109   3e-24
AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical...   106   4e-23
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    29   8.6  
AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    29   8.6  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    29   8.6  

>U42438-3|AAF99866.1|   94|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 6 protein.
          Length = 94

 Score =  109 bits (263), Expect = 3e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +1

Query: 244 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 423
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 424 EPHILLFRR 450
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AF016224-3|AAC27123.1|   94|Caenorhabditis elegans cyclin kinase
           subunit protein.
          Length = 94

 Score =  109 bits (263), Expect = 3e-24
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +1

Query: 244 SRDIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQP 423
           + D YYS KY D+E EYRHV + K++ KL+PKN LMSE EWRS+G+QQS GW+HYM H P
Sbjct: 5   NNDFYYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGP 64

Query: 424 EPHILLFRR 450
           E H+LLFRR
Sbjct: 65  ERHVLLFRR 73


>AC025726-28|AAK73928.1|  118|Caenorhabditis elegans Hypothetical
           protein Y71G12B.27 protein.
          Length = 118

 Score =  106 bits (254), Expect = 4e-23
 Identities = 44/68 (64%), Positives = 53/68 (77%)
 Frame = +1

Query: 250 DIYYSQKYYDEEHEYRHVVLPKEMVKLVPKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEP 429
           DIYYS +Y D+E+EYRHV+LP+ + + VPK  L+SE EWR  GVQQS GW HYM H PE 
Sbjct: 3   DIYYSPRYEDDEYEYRHVILPQAVSRKVPKGRLLSEAEWRRAGVQQSLGWEHYMVHNPEK 62

Query: 430 HILLFRRR 453
           HILLFRR+
Sbjct: 63  HILLFRRK 70


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
 Frame = +2

Query: 431 IFYYSEGG*QHHQKKN*YEMRFLSHHLAVKCIIFS*VSFKLGP*LSVFHYCITALNSIYS 610
           +  Y  GG  H+     +   FL H  A + I+F   + +LG    +F + +    SI  
Sbjct: 37  VVIYLHGGNLHYDSAVMFNDTFLLHTYASQEIVFVIPAVRLG----IFSHFVVEDQSIAP 92

Query: 611 IN*RLF-------FLKSNVYGLSKRNNLRKLVILKRLSYSYGKQV*NLPRYSPNMGSMFA 769
            N  LF       F KS+++     N    L     L +SYG  V ++  +S  + +  +
Sbjct: 93  NNLALFDMLQAMEFAKSDIHNFGGNNKRTTL-----LGHSYGGTVASMLSFSTKVNTDLS 147

Query: 770 LF 775
           LF
Sbjct: 148 LF 149


>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 334 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 474
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 334 PKNHLMSEQEWRSIGVQQSQGWVHYMTHQPEPHILLFRRRITTPPEK 474
           P+N  M E    S+  Q  Q W+ +     + ++LL R ++  P EK
Sbjct: 40  PENRAMQESIINSVSEQTLQSWIDFREEINKKNLLL-RNKLKIPSEK 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,776,543
Number of Sequences: 27780
Number of extensions: 494505
Number of successful extensions: 1149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)