Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A10
         (1241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    91   2e-19
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    91   2e-19
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    28   2.3  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +3

Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
           + KR        + +I T++  P Q+ +P+WFLNRQK I  GK  QL ++N+DSKLRE L
Sbjct: 52  MSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDL 111

Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
           E LK+++ HRG+RH   LRVRGQH
Sbjct: 112 ERLKKIQTHRGLRHALDLRVRGQH 135


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +3

Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
           + KR        + +I T++  P Q+ +P+WFLNRQK I  GK  QL ++N+DSKLRE L
Sbjct: 52  MSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDL 111

Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
           E LK+++ HRG+RH   LRVRGQH
Sbjct: 112 ERLKKIQTHRGLRHALDLRVRGQH 135


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 453 LEXLKQLRAHRGMRHYWGLRVRGQH 527
           +  L  +R +RGMRH  GL V GQ+
Sbjct: 77  ISRLVNIRCYRGMRHVNGLPVNGQN 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,291
Number of Sequences: 5004
Number of extensions: 18178
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)