Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A10
(1241 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 110 9e-24
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 110 9e-24
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 110 9e-24
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 110 9e-24
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 110 9e-24
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 110 9e-24
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 110 9e-24
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 110 9e-24
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 110 9e-24
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 110 9e-24
AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18 p... 103 2e-21
BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein. 91 1e-17
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 110 bits (265), Expect = 9e-24
Identities = 48/84 (57%), Positives = 61/84 (72%)
Frame = +3
Query: 276 LXKRXXXXXXXXVXKIXTLMSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREAL 455
L KR V ++ T+M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE L
Sbjct: 52 LTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL 111
Query: 456 EXLKQLRAHRGMRHYWGLRVRGQH 527
E LK++RAHRG+RH+WGLRVRGQH
Sbjct: 112 ERLKKIRAHRGLRHFWGLRVRGQH 135
>AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18
protein.
Length = 82
Score = 103 bits (246), Expect = 2e-21
Identities = 43/65 (66%), Positives = 53/65 (81%)
Frame = +3
Query: 333 MSXPXQYXLPAWFLNRQKXIVXGKYSQLTSSNLDSKLREALEXLKQLRAHRGMRHYWGLR 512
M P QY +P WFLNRQK + GKYSQ+ ++ LD+KLRE LE LK++RAHRG+RH+WGLR
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLR 60
Query: 513 VRGQH 527
VRGQH
Sbjct: 61 VRGQH 65
>BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein.
Length = 74
Score = 90.6 bits (215), Expect = 1e-17
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +3
Query: 357 LPAWFLNRQKXIVXGKYSQLTSSNLDSKLREALEXLKQLRAHRGMRHYWGLRVRGQH 527
+PAWFLNRQK + GKYSQ+ ++ LD+KL E LE LK++RA RG+RH+WGLRVRGQH
Sbjct: 1 MPAWFLNRQKDVKDGKYSQVLANGLDNKLCEDLERLKKIRARRGLRHFWGLRVRGQH 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,955,165
Number of Sequences: 237096
Number of extensions: 894398
Number of successful extensions: 1368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17669839830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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