Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A07
(1225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 138 1e-33
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 30 0.75
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 1.3
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 29 1.7
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 28 2.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 3.0
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 27 7.0
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 27 7.0
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 27 7.0
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 138 bits (334), Expect = 1e-33
Identities = 65/104 (62%), Positives = 81/104 (77%)
Frame = +2
Query: 596 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 775
R+A YN KKA KP + KS + LDVKPWDDET M LE+AVRSI DGL+WG +KLVP+
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170
Query: 776 YGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAAFNKV 907
+G++K QI+ VVEDDKVS++ L EE+E EDYVQS DIAA +K+
Sbjct: 171 FGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.9 bits (64), Expect = 0.75
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 249 FRSNQTFSCNKAAMLIIPKFRFELYL-----NTIKTLVH-TIKLNFYVNKVNRANLTA 94
FRSN + S IIP LYL +TI T+ H T ++ +N+VN L A
Sbjct: 700 FRSNTSGSAKSEGYYIIPTTEKSLYLPLRNRSTIDTISHSTSRITSRMNRVNNRRLAA 757
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 332 TELSTKVISLENENKDLKKAIDDLRN 409
T+ +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 167 VFKYNSNLNFGIISMAALLHEKVWLDRNVYNDAEKAYYESLSKM 298
+ + N+N G+IS A L V+L++ ++N A E L K+
Sbjct: 207 IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 236 WLDRNVYNDAEKAYYESLSKMDSVATLAGVP-NTELSTKVISLENENKDLKKAIDDLRNL 412
+++ N+ N+ +K ESL K + NT+LS K+ ENE +DL + L++
Sbjct: 5 FINSNINNE-DKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSY 63
Query: 413 VISLQVR 433
++ L+ R
Sbjct: 64 LVKLEAR 70
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 281 ESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 448
E + M ++ ++G T + + +E+ENK L + D+RN V L+ + E
Sbjct: 242 ERTAAMQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 673 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 569
LY+Q + W+F + C+ +LF +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 221 LHEKVWLDRNVYNDAEKAY--YESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAI 394
LHEK +D N Y DA +E SK +T + ++ ++ +K +++ I
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +2
Query: 239 LDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVI 418
+DR V + + YYESL K +A N +L +I + ++ D R + +
Sbjct: 471 VDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLERDLIRASRHPELIELGEGDKRGITL 530
Query: 419 SL 424
+
Sbjct: 531 DI 532
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,538
Number of Sequences: 5004
Number of extensions: 60631
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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