Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_A05
         (1236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    85   3e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    84   3e-17
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   3.1  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   4.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   4.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   5.4  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +2

Query: 290 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 469
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 470 RRLGTHIRAKRKREELSNVLAQMR 541
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 84.2 bits (199), Expect = 3e-17
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +2

Query: 290 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 469
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 470 RRLGTHIRAKRKREELSNVLAQMR 541
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 568 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 443
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 504 SVKNLATCSLR*GRQPPRLITITI 575
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 386  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 541
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +1

Query: 376  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 477
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,471,158
Number of Sequences: 5004
Number of extensions: 58047
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)