Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A04
(1211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.080
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.080
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.98
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.2
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 5.2
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.080
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 1162 PXKXXPPXPPGXGGXFFXXXKXPPPPPPXXPXKKKXXPP 1046
P PP PP G F + PPPPPP K+K P
Sbjct: 5 PPGNPPPPPPPPG--FEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 33.1 bits (72), Expect = 0.080
Identities = 20/54 (37%), Positives = 20/54 (37%)
Frame = +3
Query: 1050 GXXFFFXGXXGGGGGGXXXXXKKXPPXPGGXGGXXFXGXXXXXXXXKKXXGXGG 1211
G F G GGG GG PP PGG GG F G G GG
Sbjct: 177 GNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGG--FGGFGGEGHHHGGHGGFGG 228
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.98
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 643 PPGKXXXPRGGFPXPGXXGGPFLXGXPXPXGPPG 744
PPG P P PG P + G P PPG
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/79 (26%), Positives = 22/79 (27%)
Frame = -3
Query: 1092 PPPPPXXRXKKKXXPXXXXXXFFSPPXXGXPKXXXXPPXFPQKXXFXPPLFXXGFPXPPX 913
P PP + P PP PP P PPL PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSL-PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 912 XFFXFGAPXXPPKXEXPPP 856
AP PP PPP
Sbjct: 460 PAGMPAAPPLPPAAPAPPP 478
Score = 27.1 bits (57), Expect = 5.2
Identities = 24/96 (25%), Positives = 25/96 (26%)
Frame = -3
Query: 1164 PPKXXXPPPPXGXGXFFXXXXKXPPPPPPXXRXKKKXXPXXXXXXFFSPPXXGXPKXXXX 985
P + PP G G PPPPP P PP P
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPP-PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 984 PPXFPQKXXFXPPLFXXGFPXPPXXFFXFGAPXXPP 877
PP P P PP AP PP
Sbjct: 376 PPPLSSSRAVSNP------PAPPPAIPGRSAPALPP 405
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Frame = -3
Query: 1101 KXPPPPPPXXRXKKKXXPXXXXXXFFS-PPXXGXPKXXXXP--PXFPQKXXFXPP 946
K PPPPPP R + P S PP P+ P PQ PP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 1162 PXKXXPPXPPGXGGXFFXXXKXPPPPPP 1079
P PP PP G PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 1147 PPXPPGXGGXFFXXXKXPPPPPPXXP 1070
PP PPG G PPPPPP P
Sbjct: 764 PPPPPGVAGA------GPPPPPPPPP 783
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/83 (24%), Positives = 26/83 (31%)
Frame = -3
Query: 1164 PPKXXXPPPPXGXGXFFXXXXKXPPPPPPXXRXKKKXXPXXXXXXFFSPPXXGXPKXXXX 985
PP PP PPPPPP + + ++S P+
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPE---I 223
Query: 984 PPXFPQKXXFXPPLFXXGFPXPP 916
PP + K PL P PP
Sbjct: 224 PPTYTPKQ--ADPLPAPPPPPPP 244
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 5.2
Identities = 26/101 (25%), Positives = 29/101 (28%)
Frame = -3
Query: 1161 PKXXXPPPPXGXGXFFXXXXKXPPPPPPXXRXKKKXXPXXXXXXFFSPPXXGXPKXXXXP 982
P PP P G PP P P +PP P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVP----SGAPPVPKPSVAAPPV---PAPSGAP 1159
Query: 981 PXFPQKXXFXPPLFXXGFPXPPXXFFXFGAPXXPPKXEXPP 859
P P+ PP+ PP G P PP E PP
Sbjct: 1160 PV-PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 981 PXFPQKXXFXPPLFXXGFPXPPXXFFXFGAPXXPP 877
P FP++ PP FP FF FGAP P
Sbjct: 55 PTFPEQIPQLPPF--DRFPGTNANFFPFGAPFMLP 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,896
Number of Sequences: 5004
Number of extensions: 26648
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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