Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A04
(1211 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha ... 30 0.16
DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein. 27 1.1
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 23 1.7
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ... 26 1.9
AJ439060-4|CAD27755.1| 151|Anopheles gambiae putative sRNP prot... 24 7.8
>AY027891-1|AAK15783.1| 801|Anopheles gambiae collagen IV alpha 1
chain precursor protein.
Length = 801
Score = 29.9 bits (64), Expect = 0.16
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +1
Query: 646 PGKXXXP-RGGFPX-PGXXGGPFLXGXPXPXGPPG 744
PG P G+P PG G P L G P P G PG
Sbjct: 603 PGASGVPGERGYPGMPGEDGTPGLRGEPGPKGEPG 637
Score = 28.3 bits (60), Expect = 0.48
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 646 PGKXXXPRGGFPXPGXXGGPFLXGXPXPXGPPG 744
PG+ P G PG G P L G P P G PG
Sbjct: 618 PGEDGTP-GLRGEPGPKGEPGLLGPPGPSGEPG 649
Score = 24.2 bits (50), Expect = 7.8
Identities = 33/124 (26%), Positives = 36/124 (29%), Gaps = 13/124 (10%)
Frame = +1
Query: 649 GKXXXPRGGFPXPGXXGGPFLXGXPXPXGPPG-XGXXXXXXXXXXXXXXXXXXVPGXXPP 825
G P GG PG G G P GP G G VPG P
Sbjct: 398 GPAGAPGGGEGRPGAPGPKGPRGYEGPQGPKGMDGFDGEKGERGQMGPKGGQGVPGRPGP 457
Query: 826 ---PXXK--------TGG*NPXG-XGFPFXGGXXGPKXKKXXGGXGKPXXKKGGXKXXFL 969
P K G P G G+P G G + + G G P K F
Sbjct: 458 EGMPGDKGDKGESGSVGMPGPQGPRGYPGQPGPEGLRGEPGQPGYGIPGQKGNAGMAGFP 517
Query: 970 GKXG 981
G G
Sbjct: 518 GLKG 521
>DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein.
Length = 889
Score = 27.1 bits (57), Expect = 1.1
Identities = 27/95 (28%), Positives = 27/95 (28%)
Frame = -3
Query: 1095 PPPPPPXXRXKKKXXPXXXXXXFFSPPXXGXPKXXXXPPXFPQKXXFXPPLFXXGFPXPP 916
PPPPPP P F PP P P FP F GFP P
Sbjct: 530 PPPPPPPGGAVLNIPPQ------FLPP----PLNLLRAPFFPLNPAQLR--FPAGFPNLP 577
Query: 915 XXFFXFGAPXXPPKXEXPPPXVLXPRFXXGGGXXP 811
P PP P P P G P
Sbjct: 578 NAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612
Score = 23.0 bits (47), Expect(2) = 1.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -2
Query: 1096 PPPPPPXXP 1070
PPPPPP P
Sbjct: 585 PPPPPPMGP 593
Score = 21.4 bits (43), Expect(2) = 1.7
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = -2
Query: 1147 PPXPPGXGGXFFXXXKXPPPPP 1082
PP PP GG PPP
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPPP 551
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 1071 GXXGGGGGGXXXXXKKXPPXPGGXGG 1148
G GGG P PGG GG
Sbjct: 204 GGGSGGGAPGGGGGSSGGPGPGGGGG 229
Score = 21.0 bits (42), Expect(2) = 1.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 1047 GGXXFFFXGXXGGGGGG 1097
GG G GGGGGG
Sbjct: 162 GGRSSSGGGGGGGGGGG 178
>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
chain protein.
Length = 1024
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Frame = -2
Query: 748 PXXGGPXGXXPXL---KKXPPXPPGXGXPPG 665
P G G P L +K PP PPG P G
Sbjct: 698 PGEKGQKGETPQLPPQRKGPPGPPGFNGPKG 728
Score = 21.0 bits (42), Expect(2) = 9.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +1
Query: 865 GFPFXGGXXGPKXKKXXGGXGKP 933
G P G GPK G G+P
Sbjct: 329 GIPGLEGPSGPKGDAGVPGYGRP 351
Score = 20.6 bits (41), Expect(2) = 9.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +1
Query: 685 PGXXGGPFLXGXPXPXGPPG 744
PG G G P GPPG
Sbjct: 286 PGMSGEKGDKGYTGPEGPPG 305
>AJ439060-4|CAD27755.1| 151|Anopheles gambiae putative sRNP protein.
Length = 151
Score = 24.2 bits (50), Expect = 7.8
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = -3
Query: 1023 SPPXXGXPKXXXXPPXFPQKXXFXP-PLFXXGFPXPPXXFFXFGAPXXPPKXEXPPPXVL 847
+P G PK P P P P G P P P PP PP ++
Sbjct: 65 NPFTAGPPKPNISIP--PPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGMRPPPMM 122
Query: 846 XP 841
P
Sbjct: 123 VP 124
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +1
Query: 643 PPGKXXXPRGGFPXPGXXGG-PFLXGXPXPXGPPGXG 750
PP PR G PG G P L G P PP G
Sbjct: 80 PPTMNMPPRPGM-IPGMPGAPPLLMGPNGPLPPPMMG 115
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,296
Number of Sequences: 2352
Number of extensions: 11358
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 137747739
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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