Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_A03
(1221 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.54
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 31 1.3
L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family ... 30 2.9
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 30 2.9
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 30 2.9
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 30 2.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 5.0
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical ... 29 5.0
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z95559-4|CAB09004.1| 110|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 8.8
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 29 8.8
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 8.8
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 29 8.8
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 8.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 8.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 8.8
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.7 bits (71), Expect = 0.54
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -2
Query: 545 PXFFXXPFXPXXXXXPXPPPGX-PXXXIFFXGGXGXXXXXKXXXPPPPXFF 396
P FF P P P P PG P F GG PPPP F
Sbjct: 61 PSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF 111
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +3
Query: 339 GGXNFF*XXGGGGGGFXXXKKXGGGGGXGF 428
GG F GGGGGGF GGGG GF
Sbjct: 475 GGFGSF-GGGGGGGGFGGGGGGFGGGGGGF 503
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXGXXPXP 455
GGGGGGF GGG G G G P P
Sbjct: 490 GGGGGGFGGG---GGGFGSGSPFGGAAPSP 516
>L25598-5|AAM15550.1| 113|Caenorhabditis elegans Calpain family
protein 1, isoform c protein.
Length = 113
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 348 NFF*XXGGGGGGFXXXKKXGGGGGXG 425
NFF GGGGGG GG GG G
Sbjct: 49 NFFGGGGGGGGGGGGGGFGGGNGGFG 74
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 348 NFF*XXGGGGGGFXXXKKXGGGGGXG 425
NFF GGGGGG GG GG G
Sbjct: 49 NFFGGGGGGGGGGGGGGFGGGNGGFG 74
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXG 425
GGGGGGF GGGG G
Sbjct: 60 GGGGGGFGGGNGGFGGGGGG 79
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 348 NFF*XXGGGGGGFXXXKKXGGGGGXG 425
NFF GGGGGG GG GG G
Sbjct: 49 NFFGGGGGGGGGGGGGGFGGGNGGFG 74
Score = 29.5 bits (63), Expect = 5.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXG 440
GGGGGGF GGGG G G
Sbjct: 60 GGGGGGFGGGNGGFGGGGGGSGGGG 84
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +3
Query: 348 NFF*XXGGGGGGFXXXKKXGGGGGXG 425
NFF GGGGGG GG GG G
Sbjct: 49 NFFGGGGGGGGGGGGGGFGGGNGGFG 74
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGG-GGXGFXXXGXXPXPXKKNXXSXXPRGXXGXXXXXGG 521
GGGGGG GGG GG G G P P G G GG
Sbjct: 26 GGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGG 78
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.5 bits (63), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 366 GGGGGGFXXXK--KXGGGGGXGFXXXG 440
GGGGGG+ + GGGGG G+ G
Sbjct: 30 GGGGGGYSGGRGGGYGGGGGGGYGGGG 56
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 5.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 339 GGXNFF*XXGGGGGGFXXXKKXGGGGGXG 425
GG N+ GGG GG GGGGG G
Sbjct: 77 GGGNWGGNGGGGNGGGGRGGGGGGGGGRG 105
>AF125462-1|AAD12858.2| 244|Caenorhabditis elegans Hypothetical
protein Y66H1A.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 5.0
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 369 GGGGGFXXXKKXGGGGGXGF 428
GGGGGF + GGGGG GF
Sbjct: 8 GGGGGFRGGR--GGGGGGGF 25
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 6.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXG 440
GGGGGG GGGGG G G
Sbjct: 96 GGGGGGCGGGGGCGGGGGGGCGGGG 120
>Z68106-4|CAA92128.1| 112|Caenorhabditis elegans Hypothetical
protein F41E7.5 protein.
Length = 112
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 339 GGXNFF*XXGGGGGGFXXXKKXGGGGGXGFXXXG 440
GG F GG GGG + G GGG GF G
Sbjct: 65 GGNGGFGGNGGFGGGPSYGGRGGFGGGPGFGGRG 98
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXG 425
GGGGGG GGGGG G
Sbjct: 787 GGGGGGGNGGSGGGGGGGGG 806
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXG 440
GGGGGG GGGGG G G
Sbjct: 788 GGGGGGNGGSGGGGGGGGGGSGGSG 812
>Z95559-4|CAB09004.1| 110|Caenorhabditis elegans Hypothetical
protein Y41E3.8 protein.
Length = 110
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 369 GGGGGFXXXKKXGGGGGXGFXXXGXXP 449
G GGG ++ GGGGG G G P
Sbjct: 63 GAGGGGNAYRRNGGGGGGGGRNIGGLP 89
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXG 440
GGGGGG GGGGG G G
Sbjct: 99 GGGGGGGYATGGGGGGGGGGCCSCG 123
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXGXXPXPXKK 464
GG GGG + GGGGG G P P K
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGG 419
GGGGGG+ GGGGG
Sbjct: 221 GGGGGGYGSGGGWGGGGG 238
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 366 GGGGGGFXXXKKXGGGGGXGFXXXGXXPXPXKK 464
GG GGG + GGGGG G P P K
Sbjct: 619 GGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAK 651
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/60 (35%), Positives = 22/60 (36%)
Frame = +3
Query: 339 GGXNFF*XXGGGGGGFXXXKKXGGGGGXGFXXXGXXPXPXKKNXXSXXPRGXXGXXXXXG 518
GG + GGG GG GGGGG G G P N PRG G G
Sbjct: 101 GGGGYGGGHGGGHGGAVGGGYGGGGGGGG----GCQCSP-SSNTCPPGPRGPPGQAGLDG 155
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 8.8
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Frame = +3
Query: 339 GGXNFF*XXGGGG-GGFXXXKKXGGGGGXGFXXXGXXPXPXKKNXXSXXPRGXXGXXXXX 515
GG + GGGG GG+ GG G G G P ++ + G
Sbjct: 198 GGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 257
Query: 516 GGKXXXKKXGEKXKKKXXKKKXXXGXKKKXGXXGG 620
GG ++ G ++ G ++ G GG
Sbjct: 258 GGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGG 292
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 8.8
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
Frame = +3
Query: 339 GGXNFF*XXGGGG-GGFXXXKKXGGGGGXGFXXXGXXPXPXKKNXXSXXPRGXXGXXXXX 515
GG + GGGG GG+ GG G G G P ++ + G
Sbjct: 236 GGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGW 295
Query: 516 GGKXXXKKXGEKXKKKXXKKKXXXGXKKKXGXXGG 620
GG ++ G ++ G ++ G GG
Sbjct: 296 GGPQQQQQGGWGGPQQGGGGGGWGGQGQQQGGWGG 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.305 0.138 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,797
Number of Sequences: 27780
Number of extensions: 148735
Number of successful extensions: 1089
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)
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