Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P24
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    52   1e-07
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   8.3  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 226 LVEERIKTF--KNWPFNDKNK--CNVRNMAEAGFYSVATGVEDADAAKCFLCGKELDGWE 393
           L + R +TF  K WP+ ++    C    MA +GF    T  +  DAA C  C   L  WE
Sbjct: 116 LTKCREQTFVDKVWPYTNRPDYHCEPSVMAASGFVYNPTA-DAKDAAHCLYCDINLHDWE 174

Query: 394 STDDPWIEHKSHAAQCAF 447
             DDP+ EHK   A C F
Sbjct: 175 PDDDPYTEHKRRRADCVF 192



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +1

Query: 235 ERIKTF--KNWPFNDKNKCNVRNMAEAGFY----SVATGVEDADAAKCFLCGKELDGWES 396
           +R+ TF  K WP   + K     +A  GFY    S +   E  D   C++C K    WE 
Sbjct: 24  KRLDTFQKKKWP---RAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWED 80

Query: 397 TDDPWIEHKSHAAQCAFVQL 456
            DDP  EH +H+  C +  +
Sbjct: 81  DDDPLKEHITHSPSCPWAYI 100


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 199 MENESSLLFLVEERIKTFKNWPFNDKNKCNVRNMAEAG 312
           ++ E SL  L +ER   + N  FN +N  +  NM ++G
Sbjct: 26  IDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMDDSG 63


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 674 PKVFLYFSITFKHLLSACNSLSYFLAKHFLWIDLAFLSIFSLAISPICF 528
           P ++ Y    FKH+  A    ++F     LW D+ F S       P+ F
Sbjct: 175 PLIYWYIQHKFKHIPGAYTVYAFFEWSLILW-DILFDSALYWDFKPLVF 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,551
Number of Sequences: 5004
Number of extensions: 65268
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)