Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P23
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 141 1e-34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 81 2e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 73 7e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 69 6e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 61 2e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 2e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 57 3e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 56 8e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 55 1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 3e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 3e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 51 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 43 5e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 43 5e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 42 8e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 3e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 36 0.010
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 34 0.030
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.039
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.36
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.64
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.5
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 141 bits (341), Expect = 1e-34
Identities = 62/117 (52%), Positives = 83/117 (70%)
Frame = +2
Query: 302 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 481
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 482 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHI 652
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++ G++ TGSGKTL+Y LPAIVHI
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHI 184
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 661 PPIRRGDGPIALVXAPTXXXP-XIQQXAXXL-DXILCS*TCVXGG 789
P + GDGPI LV APT IQQ TCV GG
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGG 232
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.0 bits (191), Expect = 2e-16
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 317 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 493
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 494 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVHIXXXR 664
+ ++GY++PT IQAQ P SG+++ GVA+TGSGKT+A++LP HI R
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 664 PIRRGDGPIALVXAPT 711
P++ G+GPIA++ PT
Sbjct: 485 PLKTGEGPIAIIMTPT 500
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 72.5 bits (170), Expect = 7e-14
Identities = 30/80 (37%), Positives = 53/80 (66%)
Frame = +2
Query: 413 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXG 592
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 593 VAQTGSGKTLAYILPAIVHI 652
+A+TGSGKT A+I+P I+ I
Sbjct: 292 IAETGSGKTAAFIIPLIIAI 311
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 69.3 bits (162), Expect = 6e-13
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Frame = +2
Query: 404 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 574
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 575 GKNLXGVAQTGSGKTLAYILPAIVHI 652
G+++ G+A+TGSGKT+A+ +PA+ ++
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYL 227
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 61.3 bits (142), Expect = 2e-10
Identities = 28/72 (38%), Positives = 41/72 (56%)
Frame = +2
Query: 428 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTG 607
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 608 SGKTLAYILPAI 643
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/82 (32%), Positives = 50/82 (60%)
Frame = +2
Query: 398 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 577
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 578 KNLXGVAQTGSGKTLAYILPAI 643
+++ G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.2 bits (132), Expect = 3e-09
Identities = 24/58 (41%), Positives = 39/58 (67%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAI 643
F+E D + + + +G+K PTPIQ + P+ ++ +++ G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 55.6 bits (128), Expect = 8e-09
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 649
F+ + + + G+K PTPIQ + P+ + G+++ G+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 650 I 652
+
Sbjct: 131 L 131
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILP 637
F+ N +++ V G+K+ TP+QA P+ + K+L A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.0 bits (124), Expect = 3e-08
Identities = 22/68 (32%), Positives = 42/68 (61%)
Frame = +2
Query: 440 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKT 619
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 620 LAYILPAI 643
AY++P +
Sbjct: 66 AAYLIPIL 73
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 54.0 bits (124), Expect = 3e-08
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAI 643
F+ N + +G+ +G++ PT IQ + P+A+ GK++ G A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAI 643
FE+ + G+ G++ P+PIQ + PIA+SG+++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +2
Query: 404 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 583
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 584 LXGVAQTGSGKTLAYILPAIVHI 652
+ G A+TGSGKTLA+I+P I ++
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENL 101
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 45.2 bits (102), Expect = 1e-05
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Frame = +2
Query: 323 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 496
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 497 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAI 643
+ + +K E T IQ P S ++L A TGSGKT+AY+ P +
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 521 GYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAIVH 649
G+ +P PIQ+ P A G ++ G A TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 43.2 bits (97), Expect = 5e-05
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Frame = +2
Query: 461 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLXGVAQTGSGKTLAYIL 634
++ FEE + +G+ +M +++P+ IQ + P+ +S +N+ G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 635 PAIVHI 652
+ +
Sbjct: 173 TMLSRV 178
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 42.3 bits (95), Expect = 8e-05
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +2
Query: 404 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 583
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 584 LXGVAQTGSGKTLAY 628
+ AQ+G+GKT +
Sbjct: 61 VIAQAQSGTGKTATF 75
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +2
Query: 470 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPAI 643
F + ++ +K + EPT IQ + G+N G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 518 MGYKEPTPIQAQGWPIAMS--GKNLXGVAQTGSGKTLAYILPAI 643
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP +
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIV 200
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 33.9 bits (74), Expect = 0.030
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +2
Query: 461 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVAQTGSGKTLAYILPA 640
I F++ N + +G+ G++ P+ IQ + + +++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 641 IVHI 652
+ I
Sbjct: 78 LQKI 81
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.5 bits (73), Expect = 0.039
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 437 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLXGVAQTGSG 613
S ++ P + E A+ + + G+++ TP+Q + + + +N A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 614 KTLAYILPA 640
KTLA++L A
Sbjct: 89 KTLAFLLVA 97
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 569 MSGKNLXGVAQTGSGKTLAYILPAIV 646
+SGK++ + TG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.64
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 560 PIAMSGKNLXGVAQTGSGKTLAYILPAI 643
P+ G ++ A TGSGKTL+Y++P +
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 322 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 149
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 148 HDYFSDLVEDVYLNYGXFLTQG 83
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 581 NLXGVAQTGSGKTLAYILPAIV 646
NL V TG GK+L++++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 581 NLXGVAQTGSGKTLAYILPAIV 646
NL V TG GK+L++++PA++
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALI 1229
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 532 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 407
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.5
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -1
Query: 568 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 389
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 388 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 221
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 220 IIAEFVASSKFGTTVSTAII 161
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 392 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 523
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 392 PYEVEEYRNKHEVTVS 439
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 367 WIIKVFVERLE*NRIPIWASHVLPSREF 284
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,100
Number of Sequences: 5004
Number of extensions: 58137
Number of successful extensions: 192
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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