Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P22
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.053
01_03_0005 + 11568545-11569119,11569179-11569191 33 0.28
02_04_0382 - 22501041-22501279,22501717-22501810 31 1.1
05_07_0153 - 28051496-28051801,28051933-28052271 30 2.0
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.0
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621 30 2.6
02_05_0002 - 24849189-24849825,24850267-24850328 29 4.6
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 4.6
01_07_0082 - 40965947-40967023 29 4.6
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 28 8.0
07_01_0080 + 587674-588510 28 8.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.5 bits (78), Expect = 0.053
Identities = 21/59 (35%), Positives = 21/59 (35%)
Frame = +3
Query: 471 PXGXSXXTPLFXKXXPXXXFXXXXXPPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
P G P P PPPP G K GG PPPPP GG PP
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG---------PPPPPPKGGASRPP 390
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP K PPPPP G PP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPP 349
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 549 PPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPP K K PPPPP G PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP K K PPPP G PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 33.1 bits (72), Expect = 0.28
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -3
Query: 633 PXPXXGGGGGXFFFXKXPPPPXSXXGGG 550
P GGGGG PPPP S GGG
Sbjct: 76 PSGGGGGGGGGTVMYTSPPPPYSGGGGG 103
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Frame = +3
Query: 546 PPP--PXGXKXGGGXXXXKKXXPPPPPXGGG 632
PPP P G GGG PPPP GGG
Sbjct: 71 PPPSYPSGGGGGGGGGTVMYTSPPPPYSGGG 101
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 632 PXPXGGGGGXXFFXXXXPPPXFXXXGGG 549
P GGGGG PPP + GGG
Sbjct: 76 PSGGGGGGGGGTVMYTSPPPPYSGGGGG 103
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 551 PPPXXEXGGGGXFXKKKXPPPPP 619
PPP GGGG + K PPPPP
Sbjct: 83 PPPSPYYGGGGGYG--KPPPPPP 103
>05_07_0153 - 28051496-28051801,28051933-28052271
Length = 214
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 551 PPPXXEXGGGGXFXKKKXPPPPPXXGXG 634
PPP + G G + + PPPPP G
Sbjct: 138 PPPSLDTGAGYAYCYSRQPPPPPAPQWG 165
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXK--KXXPPPPPXG-GGXXXPP 647
PPPP G + G PPPPP G GG PP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXG--GGXXXPP 647
PPPP G GG PP P G GG PP
Sbjct: 1186 PPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPP 1221
>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
Length = 283
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 546 PPPPXGXKXG----GGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP + G G PPPPP GG PP
Sbjct: 26 PPPPDEREAGDFGEGWVLGVDGDLPPPPPDDGGEFPPP 63
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 551 PPPXXEXGGGGXFXKKKXPPPPPXXG 628
P P GGGG PPPPP G
Sbjct: 204 PQPADTSGGGGHPHPPPPPPPPPSAG 229
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 551 PPPXXEXGGGGXFXKKKXPPPP 616
PPP GGGG F + P PP
Sbjct: 19 PPPQAGGGGGGEFYRGPPPQPP 40
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 633 PXPXXGGGGGXFFFXKXPPPP 571
P P GGGGG F+ PP P
Sbjct: 19 PPPQAGGGGGGEFYRGPPPQP 39
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 551 PPPXXEXGGGGXFXKKKXPPPPP 619
PPP GGGG + PP PP
Sbjct: 18 PPPPQAGGGGGGEFYRGPPPQPP 40
>01_07_0082 - 40965947-40967023
Length = 358
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/80 (30%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Frame = +3
Query: 477 GXSXXTPLFXKXXPXXXFXXXXXPPPPXGXKXGGGXXXXKKXXPPPPPX---GGGXXXPP 647
G S P P + PPPP + G G PPPPP GGG PP
Sbjct: 245 GPSTAAPYGTAPPPQYGYGYPAQPPPP---QAGYGY-------PPPPPQAGYGGGYGYPP 294
Query: 648 XXXXXXXVXSXVKRAXXNDY 707
VK A N++
Sbjct: 295 QAGYGGYQQQAVKPAKKNNF 314
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 554 PPXXEXGGGGXFXKKKXPPPPP 619
PP GGGG PPPPP
Sbjct: 28 PPIPSCGGGGGGAGPTPPPPPP 49
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 574 GGGXFXKKKXXPPPPPXGXGXXXPP 648
GG ++ PPPPP G PP
Sbjct: 83 GGDGMFRRPPPPPPPPPSSGSPPPP 107
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PPPP PP
Sbjct: 302 PPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPP 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,909,987
Number of Sequences: 37544
Number of extensions: 309969
Number of successful extensions: 2098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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