Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P22
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 33 0.19
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 30 1.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.3
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 4.1
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 29 5.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 5.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.2
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 28 7.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.2
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 44 PPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP 77
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 107 PPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 140
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 138 PPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 171
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 169 PPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPP 202
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 200 PPPPTGEPQDLSAEGYASRRPPPPPKGTGSPTPP 233
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 262 PPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP 295
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +3
Query: 546 PPPPXGXKXG-GGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP G G PP
Sbjct: 75 PPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPPPP 109
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 549 PPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPP G PPPPP G G PP
Sbjct: 232 PPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 264
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 45 PPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP 77
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 108 PPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 140
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 139 PPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 171
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 170 PPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPP 202
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 232 PPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 264
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXXPPPPPXGXGXXXPP 648
PPP PPPPP G G PP
Sbjct: 263 PPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPP 295
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +3
Query: 606 PPPPPXGGGXXXPPXXXXXXXV--XSXVKRAXXNDYSPXSXAVSSGRLXTXXSSAGSGLA 779
PPPPP GGG PP S + Y P S R +S+G
Sbjct: 42 PPPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGPGPYRAKSKRSVDMKASSGDLFC 101
Query: 780 RXVXXR 797
V R
Sbjct: 102 NSVEVR 107
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGG 632
PPPP GGG + PPPPP G
Sbjct: 39 PPPPPPPPCGGG---YEAPPPPPPPSYAG 64
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/62 (32%), Positives = 20/62 (32%)
Frame = +3
Query: 462 GKXPXGXSXXTPLFXKXXPXXXFXXXXXPPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXX 641
G P G S P F P PPPP PPPPP GG
Sbjct: 50 GILPPGQSIPKPSFFIPPPVPN---GFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106
Query: 642 PP 647
PP
Sbjct: 107 PP 108
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PPPPP GG PP
Sbjct: 745 PPPPGGLPPISGGPP-----PPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PPPPP GG PP
Sbjct: 745 PPPPGGLPPISGGPP-----PPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PPPPP GG PP
Sbjct: 328 PPPPGGLPPISGGPP-----PPPPPPGGCPPPPP 356
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 561 GXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
G GG + PPPPP GGG P
Sbjct: 198 GGGSGGSGGGSGRFPPPPPPYGGGGRRRP 226
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/35 (45%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGG-GXXXPP 647
PPP G GGG PPPPP G G PP
Sbjct: 35 PPPACGNPCGGGFG------PPPPPFGPVGYALPP 63
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G + PPP G PP
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G + PPP G PP
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G + PPP G PP
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPPPPPXGGGXXXPP 647
PPPP G PPPPP GG PP
Sbjct: 564 PPPPLPQNLSGAPPPP----PPPPPMLGGPPPPP 593
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +3
Query: 546 PPPPXGXKXGGG-XXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PP PP G G PP
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXX-PPPPPXGXGXXXPP 648
PPP G G + PP PP G G PP
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 384
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Frame = +3
Query: 546 PPPPXGXKXGGGXXXXKKXXPP---PPPXGGGXXXPP 647
PPPP GGG PP P GGG PP
Sbjct: 33 PPPPSPCGCGGGGGLALPQLPPLSLPSLGGGGGCCPP 69
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = +3
Query: 546 PPPPXGXKXGGG-XXXXKKXXPPPPPXGGGXXXPP 647
PPPP G G PP PP G G PP
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +1
Query: 550 PPPXXXXXGGGXFXKKKXX-PPPPPXGXGXXXPP 648
PPP G G + PP PP G G PP
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPP 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,490
Number of Sequences: 27780
Number of extensions: 169028
Number of successful extensions: 1135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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