Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P20
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 204 2e-53
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 188 1e-48
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 105 8e-24
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 101 1e-22
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 99 4e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 98 2e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 95 9e-21
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 91 2e-19
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 70 4e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 69 6e-13
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 69 9e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 64 3e-11
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 63 4e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 62 1e-10
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 61 2e-10
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 61 2e-10
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 60 4e-10
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 54 3e-08
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 36 0.006
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.030
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.069
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 32 0.12
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.21
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 31 0.21
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.28
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 30 0.49
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 2.6
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 2.6
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 4.5
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 6.0
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 7.9
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 204 bits (497), Expect = 2e-53
Identities = 92/126 (73%), Positives = 111/126 (88%)
Frame = +3
Query: 84 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 263
M+ +KK LLKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 264 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPX*FPL 443
+WDTAGQERFQSLGVAFYRGADCCVLV+DV +F++L+SWRDEFLIQASP +P FP
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 444 RNIGKQ 461
+G +
Sbjct: 121 ILLGNK 126
Score = 79.4 bits (187), Expect = 6e-16
Identities = 37/78 (47%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Frame = +1
Query: 436 FPFVILGNKVDLDN--RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALA 609
FPF++LGNKVD++ R VS + +CQ++ +IPYFETSAKEA+NV+ AF+T+A+ AL
Sbjct: 118 FPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
Query: 610 QETEAELYNEFPDQIKLN 663
++ +F D I L+
Sbjct: 178 NMDSDDIAADFTDPIHLD 195
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 188 bits (457), Expect = 1e-48
Identities = 85/126 (67%), Positives = 107/126 (84%)
Frame = +3
Query: 84 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 263
MS++K++ LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 264 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPX*FPL 443
+WDTAGQERFQSLG+AFYRGADCCV+V++V +F S+E+WR EFL Q S +D FP
Sbjct: 61 LWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPF 119
Query: 444 RNIGKQ 461
+G Q
Sbjct: 120 IIVGNQ 125
Score = 60.9 bits (141), Expect = 2e-10
Identities = 33/81 (40%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Frame = +1
Query: 436 FPFVILGNKVDLD--NRAVSVKRGQQWCQSKN--DIPYFETSAKEAVNVELAFQTIARNA 603
FPF+I+GN++D D RAVS+ R +C+SK+ ++ +FE SAKE NV F+T++R A
Sbjct: 117 FPFIIVGNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLA 176
Query: 604 LAQETEA-ELYNEFPDQIKLN 663
L E+ + N+F + + L+
Sbjct: 177 LENESSRDDFVNDFSEPLLLS 197
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 105 bits (252), Expect = 8e-24
Identities = 44/96 (45%), Positives = 70/96 (72%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 290
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 291 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDE 398
F+SL ++ R + ++V+D+T N+F + E W ++
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED 108
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 101 bits (243), Expect = 1e-22
Identities = 40/98 (40%), Positives = 72/98 (73%)
Frame = +3
Query: 105 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 284
L K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIWDTAGQ
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQ 69
Query: 285 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDE 398
ER++++ A+YRGA ++V+D+T ++F ++ W E
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE 107
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 433 NFPFVILGNKVDLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 591
N +++GNK DL + RAVS + Q + ++N++ + ETSA +A NVE AFQT+
Sbjct: 115 NIVIMLVGNKTDLLHLRAVSTEEAQAFA-AENNLSFIETSAMDASNVEEAFQTV 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 99 bits (238), Expect = 4e-22
Identities = 45/102 (44%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIWDTAGQE 287
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 288 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQA 413
R++SL +YR A+C ++V+D+T + + +SW E QA
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA 117
Score = 34.3 bits (75), Expect = 0.023
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 448 ILGNKVDL--DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 597
+ GNK+DL + RAV + + N + +FETSAK A NV F IA+
Sbjct: 125 LAGNKLDLAQERRAVEKADAEAYAAEAN-LLFFETSAKTAENVNELFTAIAK 175
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 97.9 bits (233), Expect = 2e-21
Identities = 41/105 (39%), Positives = 71/105 (67%)
Frame = +3
Query: 84 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 263
M+ L K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 264 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDE 398
IWDTAGQERF+++ ++YRGA ++V+DVT ++F +++ W E
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE 105
Score = 43.6 bits (98), Expect = 4e-05
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = +1
Query: 445 VILGNKVDL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 597
+++GNK D+ D + V +++ S N IP+ ETSAK++ NVE AF T++R
Sbjct: 117 LLVGNKSDMVDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAFLTMSR 167
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 95.5 bits (227), Expect = 9e-21
Identities = 40/95 (42%), Positives = 67/95 (70%)
Frame = +3
Query: 105 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQ 284
L+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIWDTAGQ
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 68
Query: 285 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 389
ERF+++ A+YRGA +L++DVT +F ++ +W
Sbjct: 69 ERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +1
Query: 445 VILGNKVDL-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETE 621
+++GNK D D R VS ++GQ + + E SAK VNV+ AF T+AR Q+ +
Sbjct: 118 ILIGNKCDCEDQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAFFTLAREIKKQKID 176
Query: 622 AELYNEFPDQ 651
AE NEF +Q
Sbjct: 177 AE--NEFSNQ 184
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 91.1 bits (216), Expect = 2e-19
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Frame = +3
Query: 105 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIWD 272
L+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIWD
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWD 68
Query: 273 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQA 413
TAGQE+F+S+ +YRGA VLV+DVT ++F+ L SW + A
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMA 115
Score = 33.1 bits (72), Expect = 0.052
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 445 VILGNKVDLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQ 612
V+ G+K DL N R VS + ++C K+ ETS+ NVE F ++ + +
Sbjct: 122 VLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITR 178
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 70.1 bits (164), Expect = 4e-13
Identities = 29/93 (31%), Positives = 53/93 (56%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 290
K++++GD G GKT+ + + + +F +Y AT+G + + + +WDTAGQE+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 291 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 389
L +Y C +++FDVT+ T+K++ W
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHW 103
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +1
Query: 433 NFPFVILGNKVDLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 597
N P V+ GNKVD+ R V K K ++ Y++ SAK N E F +AR
Sbjct: 113 NIPIVLCGNKVDVKERKVKAK--AITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 69.3 bits (162), Expect = 6e-13
Identities = 30/99 (30%), Positives = 54/99 (54%)
Frame = +3
Query: 93 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWD 272
+ + +KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IWD
Sbjct: 6 KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
Query: 273 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 389
GQ F ++ A + +FD++ +T S++ W
Sbjct: 66 LGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 68.9 bits (161), Expect = 9e-13
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +3
Query: 78 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 257
C S +K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD +
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIE 62
Query: 258 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKS-LESWRDE 398
+ +WDTAGQE + L Y ++ F V + ++ ++ + W E
Sbjct: 63 LSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPE 110
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 63.7 bits (148), Expect = 3e-11
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 108 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 287
+K +++GD VGKT L+ + KF + Y T+ ++ V++ D T+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVT-VMIGDEPYTLGLFDTAGQE 62
Query: 288 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDE 398
+ L Y D ++ F VT+P +F+++ E W E
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE 100
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 63.3 bits (147), Expect = 4e-11
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Frame = +3
Query: 81 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVT 257
K S+ + K++++GD G GKT L+ F + F +Y T+ +++T + +++
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 258 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDP 428
+ +WDTAGQE + L Y ++ +L F + P + ++ E W E + PR P
Sbjct: 66 LALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE-VQHFCPRTP 122
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Frame = +1
Query: 439 PFVILGNKVDL--DNRAVSVKRGQ-------QWCQS---KNDIPYFETSAKEAVNVELAF 582
P V++G K DL D A V R Q Q QS + PY E SAKE V F
Sbjct: 122 PIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVF 181
Query: 583 Q 585
Q
Sbjct: 182 Q 182
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/98 (28%), Positives = 57/98 (58%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 290
K++++GD GVGK++L Q + F ++Y TI D K+ +D + + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 291 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFL 404
+ ++ + R + +LV+++T+ ++F + ++ + L
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL 106
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 436 FPFVILGNKVDLD-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 597
FP V++ NK DL+ R VS G+Q +S + + Y ETSAK +NVE AF ++ R
Sbjct: 114 FPVVLVANKCDLEAERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVR 167
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 61.3 bits (142), Expect = 2e-10
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Frame = +3
Query: 99 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 278
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTA 62
Query: 279 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFL 404
GQE + L Y + ++ F V AP + ++ E W E L
Sbjct: 63 GQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVL 105
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Frame = +1
Query: 433 NFPFVILGNKVDLDN-------------RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVE 573
N P +++G KVDL N + ++ + GQ Q Y E SAK V
Sbjct: 110 NLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVN 169
Query: 574 LAFQTIARNAL 606
F+T AR ++
Sbjct: 170 EVFETAARASM 180
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 61.3 bits (142), Expect = 2e-10
Identities = 29/97 (29%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 290
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 291 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLES-WRDE 398
++ L Y A ++ F + +P++ +++ + W +E
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEE 105
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 60.1 bits (139), Expect = 4e-10
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +3
Query: 99 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTA 278
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +WDTA
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTA 62
Query: 279 GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFL 404
GQE + L Y + ++ F V +P++ ++ E W E L
Sbjct: 63 GQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVL 105
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 53.6 bits (123), Expect = 3e-08
Identities = 31/98 (31%), Positives = 51/98 (52%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 290
++ +LG VGK+SL Q+V F Y TI F +K + + +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 291 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFL 404
+ L G VLV+ +T+ ++F+ ++ RD+ L
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL 104
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/112 (20%), Positives = 48/112 (42%)
Frame = +3
Query: 75 LCKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIV 254
+ + K+ ++V++LG GKT+++ +N+ N+ T G T EV +
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV----EGL 60
Query: 255 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQ 410
IWD GQ+ ++ ++ + + V D + + E L++
Sbjct: 61 RFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVE 112
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.030
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Frame = +3
Query: 111 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGA--DFLTKEVIVDDRIVTMQIWDTAGQ 284
KV+++G SG GK+S M V + + +GA D V +V + +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 285 ERFQSLGVA-----FYRGADCCVLVFDVTAPNTFKSLESWRD--EFLIQASPR 422
E F ++ +R + VFDV + + L ++R+ E + SP+
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQ 114
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 32.7 bits (71), Expect = 0.069
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +3
Query: 78 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 257
CK RK + V ILG S GK+SL+N N++ S G EV+VD
Sbjct: 232 CKEVLRKGI--NVAILGPSNAGKSSLINLLANRRIS-IVSPQSGTTRDAIEVLVDINGFP 288
Query: 258 MQIWDTAG 281
+ + DTAG
Sbjct: 289 VLLSDTAG 296
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 108 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 287
+++++LG GKT+++ K NQ TI E + I +WD GQ+
Sbjct: 22 MRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVGFNVETVTYKNI-KFNVWDVGGQD 76
Query: 288 RFQSLGVAFYRGADCCVLVFDVTAPN 365
+ + L ++ G + V D N
Sbjct: 77 KIRPLWRHYFTGTKGLIFVVDSADSN 102
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.21
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 81 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNK 176
K SS+K + L ++++GD G+G+T+ +N K
Sbjct: 44 KKSSKKGIPLNLMVVGDVGLGRTAFINTLCEK 75
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 31.1 bits (67), Expect = 0.21
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 93 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLT-KEVIVD-DRIVTMQI 266
R + + +I++G+S +GKT+ +N F+ +N ++ DF+ K + D D+ + I
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSDGDQKFNLTI 172
Query: 267 WDTAG 281
DT G
Sbjct: 173 VDTPG 177
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 93 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 218
R+ V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/81 (20%), Positives = 40/81 (49%)
Frame = +3
Query: 108 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 287
++++++G GKT+++ + + TIG + T V+ R ++ +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYRNISFTVWDVGGQD 72
Query: 288 RFQSLGVAFYRGADCCVLVFD 350
+ + L +++ + V D
Sbjct: 73 KIRPLWRHYFQNTQGIIFVVD 93
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 81 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 215
K+ SR + +++ G+SG+GKT+ F N FS K+ +G +
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE 60
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 108 LKVIILGDSGVGKTSLMNQFVNK 176
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 255 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN 365
T +IWD +++ +L V + G D VL ++ PN
Sbjct: 315 TFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPN 351
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 370 NVLGAVTSKTNTQQSAPR*KATPSDWNRSWPAVSHICIVTILSSTITSFVRK 215
N L + S TNT + + T S+WN +SH + +L + IT F +K
Sbjct: 129 NQLSVIRSSTNTVKGRKKNPTTNSNWN----GISH--VNALLDAIITLFQKK 174
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 69 KLLCKMSSRKKLL--LKVIILGDSGVGKTSLMNQFVNK 176
K L S++KKL L V ++G VGK+S++N VN+
Sbjct: 255 KSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 583 QTIARNALAQETEAELYNEFPDQIKLN 663
+T+ + AQET A+LY E D + N
Sbjct: 3 ETVNKILRAQETRAQLYKELEDALNAN 29
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -1
Query: 538 NTGCRSCSGTIVDHV*QKRHDYPSRLCFPILRRGNYXGSRGDACIRNSSLQLSKDLNVLG 359
N C C+ ++D+ + + D P C+ +Y SR C ++ + LN LG
Sbjct: 127 NKVCECCNHMLLDNP-KIKQDLPFAFCYLFSSYFSYKSSRQYTCSSEEISKVFRHLNRLG 185
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -1
Query: 265 ICIVTILSSTITSFVRKSAPIVALYWLENFL 173
I +V++++ T+ + + +API YW + F+
Sbjct: 373 IMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,380,696
Number of Sequences: 5004
Number of extensions: 68988
Number of successful extensions: 273
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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