Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P19
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 121 9e-28
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 105 4e-23
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 102 5e-22
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 100 2e-21
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 31 1.7
03_02_0423 + 8321076-8322164 28 9.1
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365 28 9.1
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 121 bits (291), Expect = 9e-28
Identities = 58/140 (41%), Positives = 96/140 (68%)
Frame = +1
Query: 262 VVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQAS 441
+V+DGG +T+L + + DPLWSA+ + + P+ V HLD+L AGA++IIT +YQA+
Sbjct: 30 LVMDGGLATELEANGADL--NDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQAT 87
Query: 442 VEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 621
++GF E G +KEQ +L+A++V++A++AR ++L+E+ D I L+ S+G YGA+L
Sbjct: 88 IQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQHPI-LVAASIGSYGAYL 145
Query: 622 HDGSEYDGSYADTTSIXTMR 681
DGSEY G Y + ++ ++
Sbjct: 146 ADGSEYSGDYGEAGTLEFLK 165
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 105 bits (253), Expect = 4e-23
Identities = 58/147 (39%), Positives = 90/147 (61%), Gaps = 8/147 (5%)
Frame = +1
Query: 265 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 444
V+DGG +T+L + + D LWSAR + T P+ + HLD+L AGA ++IT +YQA++
Sbjct: 24 VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81
Query: 445 EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLE-------EYRDYVQNDDIP-LIVGSV 600
+GF+ G ++E+ + R+V+LA +AR +YLE E +D + P LI SV
Sbjct: 82 QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140
Query: 601 GPYGAHLHDGSEYDGSYADTTSIXTMR 681
G YGA+L DGSEY G Y + ++ ++
Sbjct: 141 GSYGAYLADGSEYSGDYGNEGTLEFLK 167
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 102 bits (244), Expect = 5e-22
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +1
Query: 265 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 444
V+DGGF+TQL +G I+ DPLWSA + T P+ + H+ +L AGAD+II+++YQA++
Sbjct: 17 VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74
Query: 445 EGFVEHLGVTKEQGYELIARAVQLAKQAR-TLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 621
GF+ G+ E+ L+ R+++LA +AR + R + L+ S+G YGA+L
Sbjct: 75 PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGSYGAYL 133
Query: 622 HDGSEYDGSYAD 657
DGSEY GSY +
Sbjct: 134 ADGSEYSGSYGE 145
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 100 bits (239), Expect = 2e-21
Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Frame = +1
Query: 247 EAPHIVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITN 426
EA V+DGG +T+L H + D LWSA + + P+ + HLD+L AGA++I +
Sbjct: 20 EAGGCAVVDGGLATELEAHGADL--HDELWSASCLVSAPHLIRKVHLDYLDAGANIITSA 77
Query: 427 TYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYR--DYVQNDDIP----LI 588
+YQA+++GF + G+++E+ L+ R+V +A++AR ++ E + Y + P L+
Sbjct: 78 SYQATIQGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136
Query: 589 VGSVGPYGAHLHDGSEYDGSYADTTSIXTMR 681
S+G YGA+L DGSEY G Y + + T++
Sbjct: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLK 167
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 214 RTMTPPSSENTEAPHIVVLDGGFSTQLSCHVGHVID--GDPLWSARFIHTHPNEVVNTHL 387
+T+ + NT+ P +VV+ G QLS + ++D G LW+ + +++T
Sbjct: 71 KTLAWYAKTNTQVPELVVVPSGSRLQLSSNGLSLLDPGGHELWNPQVTSAAYANMLDTG- 129
Query: 388 DFLRAGAD 411
+F+ AGAD
Sbjct: 130 NFVLAGAD 137
>03_02_0423 + 8321076-8322164
Length = 362
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 309 PDVARQLGREPTVQHNYVRSFCILAARWSHRSSFLSR 199
P A GR P V + + FC+ +A WS FL++
Sbjct: 93 PAAAAAAGRVPVVVYFHGGGFCVGSAAWSCYHEFLAK 129
>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
Length = 550
Score = 28.3 bits (60), Expect = 9.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 592 GSVGPYGAHLHDGSEYDGSYADTTSIXTMRXMASGPEF 705
GS P HLH G ++ GS + + T A+GP F
Sbjct: 93 GSGVPAVVHLHGGVQHSGSDGHSLAWFTAGFAATGPRF 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,665
Number of Sequences: 37544
Number of extensions: 464667
Number of successful extensions: 1173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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