Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P18
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    27   2.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   2.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   8.2  

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 562 SPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 660
           +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 121 APSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 129 SSPILPAKWPTI*CAGRSSMLSVFLSAPGLDPLETLNLPRLV 254
           S+ +LP+  P +   GRSS LSV       D   TLN P  +
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSVNKKQFNADDGSTLNSPNSI 472


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 711 LASAVSNLLPAVV-FIIPLGCKSIDGVHLKVQHSLELSL 598
           LA  V ++L  V   I+P G K I  +HLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 317 GSQACLHSWAGR*NHSLPTHGHQSWQVQCFQW 222
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,835
Number of Sequences: 5004
Number of extensions: 76458
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)