Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P18
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    79   5e-15
U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    30   1.9  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    30   2.5  
Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    29   4.4  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 39/104 (37%), Positives = 59/104 (56%)
 Frame = +1

Query: 376 KKRVIGAN*PSXEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVF 555
           K++    N  + EKK LYR SF QT +EF+APTG WK +    L +  L  +  + + V 
Sbjct: 72  KEQADWKNLSAEEKKLLYRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVC 131

Query: 556 VYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRWK 687
           VY  +P +   E ++AQ++R L L+     G  + +DYEN +WK
Sbjct: 132 VYPELPPTFQNEYKEAQVERALVLEKGQFLGAPTHYDYENKKWK 175



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +2

Query: 245 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFRED 346
           K   RE VGYG NG   Y DR D+  PAIRFR++
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKE 62


>U29535-5|AAY55856.1|  159|Caenorhabditis elegans Hypothetical
           protein C25H3.15 protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 31  NP*DLSKVDEIGHKRSLSYLIFASVGECDFRTIQAQFFQQNGQLSDAPGAHQCYPCSCLR 210
           NP    +VDE G K       + ++G C+  +++AQ  ++    S +   H  Y     R
Sbjct: 60  NPECFDEVDENGKKLKT----YCALG-CE-ESLEAQLVKKIPSNSPSCVQHYTYNLERRR 113

Query: 211 QGWIHWKH*TCQD 249
           Q W+ W++ TC D
Sbjct: 114 QDWLLWRNGTCLD 126


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 168 CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTM*TGLTSPC-LPSGSVR 344
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GSV 
Sbjct: 182 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSVS 239

Query: 345 T 347
           T
Sbjct: 240 T 240


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 168 CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTM*TGLTSPC-LPSGSVR 344
           C GR+   SV   +P + PL     P +VTV+      + +P    G T P   P GS+ 
Sbjct: 105 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSIS 162

Query: 345 T 347
           T
Sbjct: 163 T 163


>Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical
           protein D1086.11 protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 505 LVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKW---DYEN 675
           ++   L   + ++  V+  SP+  S  EE QK      LD++ NP D    KW   DY++
Sbjct: 1   MIWQVLITLVVLSATVYSESPLTPSKIEECQKT-CGVPLDIRTNPDDTKCKKWNNCDYDD 59

Query: 676 NR 681
            +
Sbjct: 60  RK 61


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 115 DFRTIQAQFFQQNGQLSDAPGAHQCYPCS-CLRQGWIHWKH 234
           DF  +    F    ++ + PG+ Q  PCS C   G IH  H
Sbjct: 119 DFEVMPGHLFVDQVRVFEMPGSSQINPCSACNSDGTIHCFH 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,943
Number of Sequences: 27780
Number of extensions: 431679
Number of successful extensions: 1083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)