Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P17
         (977 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.1  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            22   6.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 601 PPPPPPP 581
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 640 PXRGGGFFWXXXXPPPPPPPXKKXXGXGGGGXXFXXPS 527
           P  GGG FW       P P      G    G     PS
Sbjct: 29  PEAGGGGFWLAAASGAPHPAALPIEGCNETGFINSQPS 66


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 640 PXRGGGFFWXXXXPPPPPPPXKKXXGXGGGGXXFXXPS 527
           P  GGG FW       P P      G    G     PS
Sbjct: 29  PEAGGGGFWLAAASGAPHPAALPIEGCNETGFINSQPS 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,398
Number of Sequences: 336
Number of extensions: 2649
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27720044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)