Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P17
         (977 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.020
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 601 PPPPPPPXKKXXGXGGGGXXFXXPSXPPPXP 509
           PPPPPPP ++  G    G      S PPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
 Frame = +3

Query: 540 KXXPPPPXPXXFFXG----GGGGGGXXXXQKXPPPRXGGXXXLXXXP-----PXPPP 683
           K  PPPP P     G    G G          PPPR      +   P     P PPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 601 PPPPPPPXKKXXGXGGGGXXFXXPSXPPPXP 509
           PPPPPPP  +    G         S PPP P
Sbjct: 337 PPPPPPP--RSNAAGSIPLPPQGRSAPPPPP 365


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 644 PPPPGGGXFLXXXXXPPPPPP 582
           PPPP    F      PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -2

Query: 601 PPPPPPPXKKXXGXGGGGXXFXXPSXPPPXP 509
           PPPPPPP             F  PS PPP P
Sbjct: 9   PPPPPPPP-----------GFEPPSQPPPPP 28



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 644 PPPPGGGXFLXXXXXPPPPPP 582
           PPPP           PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 644 PPPPGGGXFLXXXXXPPPPPP 582
           PPPP  G        PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 598 PPPPPPXKKXXGXGGGGXXFXXPSXPPPXP 509
           PPPPPP     G  G G     P  PPP P
Sbjct: 761 PPPPPP---PPGVAGAG----PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 644 PPPPGGGXFLXXXXXPPPPPP 582
           PPPP     +     PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 644 PPPPGGGXFLXXXXXPPPPPP 582
           PPPP           PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 601 PPPPPPPXKKXXGXGG 554
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 598 PPPPPPXKKXXGXGGG 551
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 21.4 bits (43), Expect(2) = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 601 PPPPPPPXK 575
           PPPPP P K
Sbjct: 908 PPPPPLPVK 916


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -2

Query: 601  PPPPPPPXKKXXGXGGGGXXFXXPSXPPP 515
            P PPPPP                PS PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,336
Number of Sequences: 5004
Number of extensions: 28168
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)