Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P16
(942 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0980 + 21406822-21409496,21410322-21410376 33 0.33
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 32 0.76
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 31 1.8
11_06_0092 + 19973364-19975983,19976272-19976648 29 7.1
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 28 9.4
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 28 9.4
05_07_0114 - 27769593-27770267 28 9.4
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 9.4
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 33.1 bits (72), Expect = 0.33
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 470 LPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAPI 345
LP + ++GP AV + W G H PSLF AP+
Sbjct: 836 LPAVAADGPK-PAVEIEKDVWDALEWDGVEADHHPSLFQAPV 876
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 31.9 bits (69), Expect = 0.76
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 641 GPCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAPIPL 504
G L++ G+ +CA A +PAR R+ I S T P+P+
Sbjct: 90 GELLSVPVGLSRCACPLCGAELAVYPARLRNYILSSAATAAVPVPV 135
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 30.7 bits (66), Expect = 1.8
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = -2
Query: 650 AAEGPCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAPIPLEGRRTLSS--V 477
AA L A + A VSA A PA S +C P+ RTL S V
Sbjct: 4 AASSSLLAAASSSSRAAAVSARRAPSASPAAAASLPSPSRASCAPPLRASAARTLRSRVV 63
Query: 476 CPLPPLCSEGPSCRAVSTQNGFLSLRSWP 390
P P+ R + + L RS+P
Sbjct: 64 ASAAPAMQPPPASRVSTVVDVDLGDRSYP 92
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 360 IPSSNLSIDCDICESFASINLSRLLIRGSS 271
I SSN+ +D D+ L+R+LI GSS
Sbjct: 824 IKSSNVLLDADMVAHVGDFGLARILIEGSS 853
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 378 TAPAFSIPSSNLSIDCDICESFASINLSRLLI 283
+AP S P + L++DC++C + A L+R+ +
Sbjct: 169 SAPPGSSPYAILALDCEMCVTAAGFELTRVTL 200
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 540 AKPNNVLRSNSS*RPTYTLICLSTAATLFRRTVMSCSF 427
+K N+ S+S R Y +IC+ A +LF+ V S+
Sbjct: 1167 SKIENIEMSSSGKRTEYAIICIELALSLFKEYVTISSY 1204
>05_07_0114 - 27769593-27770267
Length = 224
Score = 28.3 bits (60), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 542 EQSLTTCFAPIPLEGRRTLSSVCPL 468
+Q++ +CF P+P EG R + + P+
Sbjct: 173 DQNVVSCFYPVPSEGTRQVLTALPI 197
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 695 TCTRPCLPXEXPRRFAAEGPCLTIAYGVEQCARVSAPARQVAHPARK 555
T RP L P EG C + E+C +AP+++ P RK
Sbjct: 1052 TVGRPLLSSSDPEDIGTEGECAPRGHLDEECPGDAAPSKE-GRPRRK 1097
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,587,491
Number of Sequences: 37544
Number of extensions: 471751
Number of successful extensions: 1508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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