Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P16
         (942 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027939-1|AAH27939.1|  600|Homo sapiens SNED1 protein protein.        31   6.1  
BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open readi...    31   8.0  
BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open readi...    31   8.0  
BC098568-1|AAH98568.1| 1164|Homo sapiens chromosome 14 open read...    31   8.0  
AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens ...    31   8.0  
AK000870-1|BAA91404.1|  614|Homo sapiens protein ( Homo sapiens ...    31   8.0  
AB002344-1|BAA21572.2| 1682|Homo sapiens KIAA0346 protein.             31   8.0  

>BC027939-1|AAH27939.1|  600|Homo sapiens SNED1 protein protein.
          Length = 600

 Score = 31.1 bits (67), Expect = 6.1
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 500 GRRTLSSVCPLPPL-CSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAPICRS 336
           GR  L    PL PL C+E   CRA   +NG  S R+ PG      P+ F    C +
Sbjct: 9   GRLRLEPATPLTPLLCAERDECRAHPCRNGG-SCRNLPGAYVCRCPAGFVGVHCET 63


>BC126479-1|AAI26480.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
 Frame = -2

Query: 689 TRPCLPXEXPRRFAAEG-PCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAP 513
           +RP  P   PR+    G PCL +  G       S+P R  A P    H        C  P
Sbjct: 34  SRPGAPAAGPRKLLVPGLPCL-VRGGWPWTRPDSSPFRPAARPRMSPHRSPAVARRCGRP 92

Query: 512 IPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLS--LRS-WPGTRPPHRPS 363
              + RR  +   P P     GP  R++  ++ F+   LR+ WP       P+
Sbjct: 93  RRRDPRRRRTPALPRPWPGRGGPG-RSLLHRHLFIQQLLRTCWPALPRDRTPA 144


>BC126477-1|AAI26478.1|  200|Homo sapiens chromosome 4 open reading
           frame 38 protein.
          Length = 200

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
 Frame = -2

Query: 689 TRPCLPXEXPRRFAAEG-PCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAP 513
           +RP  P   PR+    G PCL +  G       S+P R  A P    H        C  P
Sbjct: 34  SRPGAPAAGPRKLLVPGLPCL-VRGGWPWTRPDSSPFRPAARPRMSPHRSPAVARRCGRP 92

Query: 512 IPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLS--LRS-WPGTRPPHRPS 363
              + RR  +   P P     GP  R++  ++ F+   LR+ WP       P+
Sbjct: 93  RRRDPRRRRTPALPRPWPGRGGPG-RSLLHRHLFIQQLLRTCWPALPRDRTPA 144


>BC098568-1|AAH98568.1| 1164|Homo sapiens chromosome 14 open reading
           frame 102 protein.
          Length = 1164

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 394 QERRERNPF*VETARHDGPSEQSGGSGQTDESVRRPSRGIG 516
           ++++ ++    +T R  GPS  S     TD    +PSRG+G
Sbjct: 86  KKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVG 126


>AK054839-1|BAB70812.1|  200|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30277 fis, clone BRACE2002752. ).
          Length = 200

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
 Frame = -2

Query: 689 TRPCLPXEXPRRFAAEG-PCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCFAP 513
           +RP  P   PR+    G PCL +  G       S+P R  A P    H        C  P
Sbjct: 34  SRPGAPAAGPRKLLVPGLPCL-VRGGWPWTRPDSSPFRPAARPRMSPHRSPAVARRCGRP 92

Query: 512 IPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFLS--LRS-WPGTRPPHRPS 363
              + RR  +   P P     GP  R++  ++ F+   LR+ WP       P+
Sbjct: 93  RRRDPRRRRTPALPRPWPGRGGPG-RSLLHRHLFIQQLLRTCWPALPRDRTPA 144


>AK000870-1|BAA91404.1|  614|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10008 fis, clone HEMBA1000227. ).
          Length = 614

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 394 QERRERNPF*VETARHDGPSEQSGGSGQTDESVRRPSRGIG 516
           ++++ ++    +T R  GPS  S     TD    +PSRG+G
Sbjct: 86  KKKKRKHQHHKKTKRKHGPSSSSRSETDTDSGKDKPSRGVG 126


>AB002344-1|BAA21572.2| 1682|Homo sapiens KIAA0346 protein.
          Length = 1682

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 473 PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLFPAP 348
           P PP   +GP+CRA + ++G +    + GT  P RP+  P P
Sbjct: 480 PPPPAWLKGPACRA-AREDGEILEELFFGTEGPPRPAPPPLP 520


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,483,336
Number of Sequences: 237096
Number of extensions: 2315063
Number of successful extensions: 9310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9305
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12381054106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)