Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P14
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 79 1e-15
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 3.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 3.6
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 27 3.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 4.8
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 27 4.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 8.4
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 8.4
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 78.6 bits (185), Expect = 1e-15
Identities = 39/119 (32%), Positives = 69/119 (57%)
Frame = +3
Query: 249 EEAVDCYLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDAN 428
+EA + +L AAN +++ K+ AG AF AA++ LK + DAA+ +V+A Y++ +
Sbjct: 32 DEASELFLDAANGYRLQKQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPS 91
Query: 429 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEES 605
EA L AIE++T G F AA ++ +++E E D A+ YE A +++ +++
Sbjct: 92 EAARVLQIAIELFTRRGNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQA 150
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 614 ANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEXMFRAAL 766
ANK LK A A Y AI+ +EQ+A++S+ N+LLK+S K+ + +A L
Sbjct: 154 ANKAYLKAADLAGLCGEYSLAIRKFEQVARASVQNNLLKWSVKDYLLKAGL 204
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 659 EHYDKAIQIYEQIAKSSLDNSL 724
EHYD+A+Q +Q+ ++ L+ SL
Sbjct: 277 EHYDRAMQYLKQLVENILNRSL 298
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 336 AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 494
A ++ A +HDA +DA+ + ++ A +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142
>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 632 KLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSA 739
KLA Y+ L Y A QIYE ++ ++ YSA
Sbjct: 398 KLADYSFMLRDYSHANQIYEIASRQYENDGACLYSA 433
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 605 TSSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEXM 751
TS L +A Q+E + I ++ +S++DNS L Y A M
Sbjct: 10 TSKKEPKQLDIAASDQQIEQWSDQIHKLDKAIRSTIDNSRLFYDAWRCM 58
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 189 SPPRPLAASLFVSLSAISADLVKH 118
S PRP +L + LS IS+ LVKH
Sbjct: 457 SLPRPFLLALSILLSIISSFLVKH 480
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 384 NFVDASNCYKKCDANEAVSCLLK 452
N+ +ASNCY+ D +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 8.4
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
Frame = +3
Query: 261 DCYLRAANLFKMAKKWP-QAGQAFCNAAQL-HLKAGVRHDA--ATNFVDASNCYKKCDAN 428
DC L + ++W Q NA +L H + HD A VD + + D
Sbjct: 613 DCETLIQKLGPLPEQWVCQYAAELLNAIELLHQDGIIHHDIKPANMLVDETGHIRLTDFG 672
Query: 429 EAVSCLLKAIEIYTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEESP 608
+ + K E+Y R + K H N+ E + + + R +++Y D ESP
Sbjct: 673 LSENVEEKK-EVYKLTKRMSFEQK-HGNLYEQLQPKKFEFVRYVRNYRGNIDELEKAESP 730
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,754
Number of Sequences: 5004
Number of extensions: 46329
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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