Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P14
         (896 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical pr...   147   1e-35
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    35   0.091
AL132898-17|CAB60957.2|  299|Caenorhabditis elegans Hypothetical...    30   2.6  
U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g ...    29   6.0  
AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl prot...    28   7.9  
AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical...    28   7.9  

>U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical
           protein D1014.3 protein.
          Length = 295

 Score =  147 bits (356), Expect = 1e-35
 Identities = 80/223 (35%), Positives = 105/223 (47%), Gaps = 1/223 (0%)
 Frame = +3

Query: 159 KAMQLMAEAEXXXXXXXXXXXXXXXXXXXIEEAVDCYLRAANLFKMAKKWPQAGQAFCNA 338
           KA Q MAE                       EA D +++  NLFKMAK W  AG AF  A
Sbjct: 7   KARQKMAEGRKKLSGGGGFLNRMFGGGGSNAEAADLFIQGGNLFKMAKNWQAAGDAFLEA 66

Query: 339 AQLHLKAG-VRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNI 515
           A+ + K G  +HD AT + +A+NC++K     AV CL K  EIYTDMGRFT+AAK H +I
Sbjct: 67  AEFYAKNGDSKHDCATQYAEAANCFRKIQPERAVQCLEKTSEIYTDMGRFTMAAKNHVSI 126

Query: 516 AELYETECVDLARAMQHYEQAADYFRGEESPPPPTSAC*XXXXXXXXXXXXXXXXXXXXX 695
           AELYETE  D  + ++HY+QAADY++GEE     +                         
Sbjct: 127 AELYETELPDKEQCVKHYQQAADYYKGEEQKSSASKCLVKVAMYSAELEKYSQAIAVFEE 186

Query: 696 XXXXXXXXACSSTVRRSXCSEPPWCHLCVXIXNAQHALXXYSS 824
                   +      +    +   CHLC+   N Q AL  Y +
Sbjct: 187 IAFFEADHSTLKYAAKGHFFQALLCHLCIDPINTQQALQKYEN 229



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/53 (50%), Positives = 40/53 (75%)
 Frame = +2

Query: 608 SSANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNSLLKYSAKEXMFRAAL 766
           SSA+KC++K+A Y+A+LE Y +AI ++E+IA    D+S LKY+AK   F+A L
Sbjct: 158 SSASKCLVKVAMYSAELEKYSQAIAVFEEIAFFEADHSTLKYAAKGHFFQALL 210


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 34.7 bits (76), Expect = 0.091
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 465 YTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQAADYFRGEESPPPPTSA 626
           Y   G FT   +QHQ   ++ + + V +   MQ ++Q   Y   +  PPPP +A
Sbjct: 394 YAPPGNFTQPQQQHQ---QMDQQQAVQMQHQMQMFQQMQPYGMPQGGPPPPHAA 444


>AL132898-17|CAB60957.2|  299|Caenorhabditis elegans Hypothetical
           protein Y59A8B.8 protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +3

Query: 291 KMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVD-ASNCYKKC-DANEAVSCLLKAIEI 464
           K A +  +  +     + + LK     D A + ++ AS CY+   D  +A   LLKA E 
Sbjct: 8   KEAAECERKAEDCMKTSMIKLKFKPDFDGAASAMERASVCYRNAQDPKKAAGSLLKAAEY 67

Query: 465 YTDMGRFTVAAKQHQNIAELYETECVDLARAMQHYEQA 578
           Y        AAK  +  A L   +  + + A+  +E+A
Sbjct: 68  YEQNRNLFHAAKAREGAAMLLR-DIKEFSEAVVLFEKA 104


>U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform a protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 267 YLRAANLFKMAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDA-NEAVSC 443
           Y +  N   M K + QA +       +    G +   A +  +  N +K   A N+A++ 
Sbjct: 47  YCQLGNAHTMLKDYEQALKFHTYDILVERLLGNKEGEAKSCANLGNIFKMKGAYNDALTF 106

Query: 444 LLKAIEIYTDMGRFTVAAKQHQNIAELY 527
             K ++   ++G   + ++ + NIA +Y
Sbjct: 107 TFKQLDFAEELGDRVLKSRAYYNIATIY 134


>AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl
           protease protein 3 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 482 TTHIGVDLDRFQETGHGLVSITFLVTVRSIYKIGGSIMANTSFQVELCCITESLPCLRPL 303
           TT+    +D   +TG  L++    V  +  +KIGG  + N  ++VE C    SLP +   
Sbjct: 267 TTYTSGPIDSIVDTGTSLLTGPTDVIKKIQHKIGGIPLFNGEYEVE-CSKIPSLPNITFN 325

Query: 302 LG 297
           LG
Sbjct: 326 LG 327


>AF077542-13|AAC26302.1|  294|Caenorhabditis elegans Hypothetical
           protein Y57G7A.10a protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 614 ANKCMLKLAQYAAQLEHYDKAIQIYEQIAKSSLDNS 721
           +N+ +   A      EHY KA+ IYE++ +   +N+
Sbjct: 85  SNRVLKLKAMQLESTEHYQKALDIYERLVEDEPNNN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,741
Number of Sequences: 27780
Number of extensions: 292332
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)