Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P13
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   4.9  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   8.6  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 398 ASWNTGCPGWWRHSS 354
           A+W  G PGW+ H++
Sbjct: 216 AAWEAGLPGWYSHNA 230


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 292 VYLQAYSLFNRYFTNVEKITPFANTQIXG*YT 197
           +YL+AYS+  +YF++ + +   A     G +T
Sbjct: 488 IYLKAYSIIEKYFSDEDAVEDLAPETENGAFT 519


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 326 KLLTQMTMKKMNVATIQDIQYSTMLTRAGHVVIRKVL 436
           KLL  + +K  N   + D+Q + +    GH+   K++
Sbjct: 221 KLLNNLRIKNTNTNEVSDLQVNGLFYAIGHIPATKLV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,857
Number of Sequences: 5004
Number of extensions: 69726
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)