Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P13
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...   112   4e-25
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...   112   4e-25
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical ...    29   6.2  

>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score =  112 bits (269), Expect = 4e-25
 Identities = 43/75 (57%), Positives = 56/75 (74%)
 Frame = +1

Query: 286 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 465
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 466 CTLSKHSNVKPVEPV 510
           CT  KHSN KPV+ V
Sbjct: 63  CTRGKHSNEKPVDIV 77



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 30/60 (50%), Positives = 38/60 (63%)
 Frame = +1

Query: 304 CYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 483
           C N GC   FD + N K+ C+HHPG  +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score =  112 bits (269), Expect = 4e-25
 Identities = 43/75 (57%), Positives = 56/75 (74%)
 Frame = +1

Query: 286 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 465
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 466 CTLSKHSNVKPVEPV 510
           CT  KHSN KPV+ V
Sbjct: 63  CTRGKHSNEKPVDIV 77



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 30/60 (50%), Positives = 38/60 (63%)
 Frame = +1

Query: 304 CYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 483
           C N GC   FD + N K+ C+HHPG  +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -3

Query: 230 FCKYSNXG---VIHCSYNMIGLKLENKCVSCMYVCSNKFCF*FRDKMTC 93
           +C+Y N G    I CS N   LK +N        C     F  R K TC
Sbjct: 284 YCRYDNVGKCGTIDCSINHFTLKAQNSSEITGDRCDRLELFGLRGKATC 332


>Z81070-4|CAB03003.2|  474|Caenorhabditis elegans Hypothetical
           protein F26E4.5 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 553 EVRAPVAGPQLQ-RPPFETPLVLLETHIAESLKQSQPNTEXKNSSL 687
           EV   V GP L  +   ET      T +++S+++S PN +  NSSL
Sbjct: 16  EVETAVRGPDLLLKATDETSSDGASTSLSKSVEESAPNKDKSNSSL 61


>AC084155-1|AAG23361.2|  352|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.6 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 185 MIGLKLENKCVSCMYVCSNKFCF*FRDKMTCQMPCVASLTAFLTSKS*GIP 33
           ++ ++ +N+C SC  VC N+ C        CQM    S   F+  K   IP
Sbjct: 16  LLTVETKNECYSCSGVCHNENC-------NCQMGSCESSQCFIEKKPTEIP 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,174
Number of Sequences: 27780
Number of extensions: 404394
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)