Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P11
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 91 1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 32 0.094
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 27 3.6
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 4.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 4.7
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 6.2
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.2
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 6.2
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 26 8.2
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 91.5 bits (217), Expect = 1e-19
Identities = 45/82 (54%), Positives = 52/82 (63%)
Frame = +1
Query: 172 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 351
K EHINLKV+GQDN V FKIKK T KLM YC R G SM +RF DG+ I +
Sbjct: 30 KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89
Query: 352 TPTSLEMEEGDTIEVYQQQTGG 417
TP L+ME+GD IE +Q GG
Sbjct: 90 TPAELDMEDGDQIEAVLEQLGG 111
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 32.3 bits (70), Expect = 0.094
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 396
++ L+ YC +S + +R F+G+ ++ ND S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 644 YTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRVHL---ID 474
+ Y L K FET N M+ V P T TD ++ KL G RVHL +D
Sbjct: 24 FNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERVHLNTTLD 82
Query: 473 FDPLEMVN 450
++ L N
Sbjct: 83 YEVLRGQN 90
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 640 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 551
L+I + T Y RRI+ C A LC + Y+L
Sbjct: 39 LLIVVITLY-RRIVECCASLCSLIFSKYYL 67
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 478 LILTHWRWSILKIIKFTLGTLLR 410
L+ H RWS +++ K+ LGT +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 270 HQFPERCVFLYFELYNCI 217
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 237 FELYNCIILT*YFQINVFVFSLLFI 163
+E+YN +I + Y INV F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 270 HQFPERCVFLYFELYNCI 217
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 8.2
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +1
Query: 61 CHLRVRL*KQIPNQFVN-SQFCINS----F*NHINLKM---ADEKKGENEHINLKVLGQD 216
CH R L QI N++ S++ + F IN+K A + K ++ HI + G+
Sbjct: 126 CHTR-ELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184
Query: 217 NAIVQFKIKKHTPLRKLMNAYCDR 288
NA+V+ KI K ++ + CD+
Sbjct: 185 NALVREKILKVNSVKHFVLDECDK 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,281
Number of Sequences: 5004
Number of extensions: 67380
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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