Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P10
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    30   0.38 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.1  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   8.1  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   8.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   8.1  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 259 LEQEIFLNYS*DKILHIWNGQLILNSL 179
           L ++IF+  S DK++ IWNG+ ++ S+
Sbjct: 146 LGEDIFITGSADKLIKIWNGEKLVKSI 172


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 745  QWEKEIDDSFSEG--EVIYQGYVDDCRNTDNSWIET*HT 855
            QW++EI++++SEG  + + Q Y+      D+ W +  H+
Sbjct: 1619 QWQQEIENNWSEGSFDGVLQSYM-YATQFDSKWYKAWHS 1656


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 819 PTVIHITLIYYFTFTKRIIYFFLPLYLSVRLNELRASSLNSLIAVSLTFSXRIHHTTWYS 640
           P +   T+ Y FTF     +  +P+   V    +    L SL  VSL    ++ +  W++
Sbjct: 161 PDIFIDTMGYAFTFCVVKSFQNIPVGAYVHYPTISTDMLKSLKQVSLLAKVKMAYWRWFA 220

Query: 639 PLSS 628
            L S
Sbjct: 221 QLYS 224


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 409 RVSYNGPYQIVNGF-PLNPLGRTGICGRGVLGRWGPNHAADPIISRWKRLDNGNMAVGVN 585
           RV+  G Y+  +GF  + P+G T +    ++    P  + + ++ R K L     AV  N
Sbjct: 410 RVALLGRYE--HGFMSMIPVGATNV--GSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKN 465

Query: 586 NKPILQFIAIKRGD 627
             P+L  + + RG+
Sbjct: 466 ASPVLDGMPVSRGE 479


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 394 DGNISRVSYNGPYQIVNG 447
           DGN+ R++Y+G   + NG
Sbjct: 197 DGNVQRLTYDGTVDVFNG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,647
Number of Sequences: 5004
Number of extensions: 73154
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)