Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P10
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1363 + 26410606-26410680,26411728-26411843,26411927-264119... 32 0.53
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 32 0.70
12_01_0088 - 698169-698614,699514-700819,703041-703148 29 3.7
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 4.9
12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725... 29 6.5
11_01_0087 - 654461-654912,655878-657186,659080-659187 29 6.5
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 29 6.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 8.6
04_01_0007 + 168423-168485,168590-168697,169662-169741,170497-17... 28 8.6
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 28 8.6
>08_02_1363 +
26410606-26410680,26411728-26411843,26411927-26411989,
26412067-26412103,26412193-26412274,26412747-26412865,
26412942-26413037,26413609-26413719,26413792-26413893,
26414053-26414100,26414230-26414445,26414547-26414675
Length = 397
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 181 MNSILTVHSKCVGFYPRSNLKRFP--VPDDKVDWSTEYKQYNPP 306
++SI + +C GF+ + + K FP V D ++WST Q + P
Sbjct: 222 LDSINIIEEECQGFFVQKDYKMFPPSVDWDNINWSTRRPQMDFP 265
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 308 LGGLYCLYSVDQSTLSSG-TGNLFKLLLG*NPTHLEWT 198
+GGLYC Y Q + G G L KL L T L+W+
Sbjct: 207 IGGLYCCYDETQCKVKEGFNGELRKLFLRYTVTWLDWS 244
>12_01_0088 - 698169-698614,699514-700819,703041-703148
Length = 619
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 178 LMNSILTVHSKCVGFYPRSNLKRFPVPDDKVDWSTEYKQYNP 303
L +S + G P S+ + FP P KVDWS +Y Y P
Sbjct: 438 LSSSPTSSQGSLCGVGPTSS-EGFPGPHGKVDWSRDYCYYPP 478
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 238 LKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADP 351
L+ F DD D YK + P+Y P HG+P A P
Sbjct: 5 LRCFKGDDDGGDHYPYYKPTSRPHYQPPHYHGQPAAPP 42
>12_02_0170 -
14871985-14872110,14872239-14872454,14872541-14872588,
14872960-14873061,14873144-14873254,14873388-14873483,
14873579-14873697,14874014-14874095,14874149-14874218,
14874320-14874382,14874487-14874602,14874731-14874817
Length = 411
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 181 MNSILTVHSKCVGFYPRSNLKRFP--VPDDKVDWSTEYKQYNPP 306
++ I + +C GF+ + + K FP V D + WST Q + P
Sbjct: 237 LDRIDIIEEECQGFFMQKDYKMFPPSVDWDNIVWSTRKPQMDYP 280
>11_01_0087 - 654461-654912,655878-657186,659080-659187
Length = 622
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 247 FPVPDDKVDWSTEYKQYNP 303
FP P KVDWS +Y Y P
Sbjct: 461 FPGPHGKVDWSRDYCYYPP 479
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 280 TEYKQYNPPNYTFPGLHGKPYADPEIGDPNFEPLW-NSIDGNISRV 414
++ +Q P Y+ P +HG +GDP + LW + G R+
Sbjct: 304 SQLQQIARPLYSNPPVHGALIVSTILGDPELKSLWLKEVKGMADRI 349
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 397 GNISRVSYNGPYQIVNGFPLNPL 465
G++S +SY GP ++N P NPL
Sbjct: 346 GSLSTLSYTGPPPLMNIMPRNPL 368
>04_01_0007 +
168423-168485,168590-168697,169662-169741,170497-170548,
171112-171200,171756-171875,172204-172248,172352-172436
Length = 213
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 340 YADPEIGDPNFEPL-WNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGVLG 501
Y P++ D + PL WN +D V +G Q + +PL RT GV G
Sbjct: 40 YMSPQLFDAHLTPLGWNQVDCLREHVKKSGLAQKIELVITSPLLRTMQTAVGVFG 94
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 382 WNSIDGNISRVSY-NGPY 432
WNS+DGN+ RVS+ PY
Sbjct: 751 WNSLDGNLGRVSHAEDPY 768
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,859,424
Number of Sequences: 37544
Number of extensions: 452546
Number of successful extensions: 997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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