Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P10
(878 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-4|AAC46768.2| 260|Caenorhabditis elegans Nudix family pr... 196 2e-50
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr... 51 1e-06
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ... 51 1e-06
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 36 0.029
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 34 0.12
Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical pr... 31 0.82
AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical ... 31 0.82
Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical ... 29 3.3
Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 5.8
>U23484-4|AAC46768.2| 260|Caenorhabditis elegans Nudix family
protein 6 protein.
Length = 260
Score = 196 bits (477), Expect = 2e-50
Identities = 106/221 (47%), Positives = 138/221 (62%), Gaps = 5/221 (2%)
Frame = +1
Query: 199 VHSKCVGF---YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADPEIGDPN 369
VH KC Y SN+ R VPD+ V WS E+ YNPP +T P + G +ADPEI +
Sbjct: 4 VHQKCRNIDTVYLGSNIHRLNVPDNLVKWSQEWSGYNPPAHTDPKVDGAVWADPEIDEKT 63
Query: 370 FEPLWNSIDGNISRVSYNGPYQI--VNGFPLNPLGRTGICGRGVLGRWGPNHAADPIISR 543
F+P WN+IDG I+RVSY Y V PLNP+GRTG+ GRG+LGRWGPNHAADPI+SR
Sbjct: 64 FQPSWNAIDGKINRVSYVCQYSFDPVTLRPLNPIGRTGLSGRGLLGRWGPNHAADPIVSR 123
Query: 544 WKRLDNGNMAVGVNNKPILQFIAIKRGDTGEWAIPGGMVDPG*KS**DCYKRI*RRSS*F 723
DNG+ L+F+A++R D GEWAIPGGMVD G + + RR
Sbjct: 124 TN--DNGD----------LEFVAVQRHDNGEWAIPGGMVDAG-----EHVSQTLRREF-A 165
Query: 724 IKPDR*IQWEKEIDDSFSEGEVIYQGYVDDCRNTDNSWIET 846
+ I + +D+ ++ G+ +Y+GYVDD RNTDN+W+ET
Sbjct: 166 EEAMHGIVDSENLDELWNNGKELYRGYVDDPRNTDNAWMET 206
>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
ZK512.3 protein.
Length = 1418
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 223 YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPG----LHGKPYAD--PEIGDPNFEPLW 384
YP SN+ + V W+ +YNPP Y P + Y D E + +W
Sbjct: 1164 YPESNILKISVNMVSKPWTVLVPRYNPPFYCKPAEDFPSDVQKYVDIATEQNVGELKRIW 1223
Query: 385 NSIDGNISRVSYNGPYQI-VNGFPLNPLGRTGICGRGVLGRWGPN 516
S N S + +++ GFPLNP GRTG+ GRG R+G N
Sbjct: 1224 RSRQANDVTSSNDKCWKLSAAGFPLNPNGRTGMAGRGNHPRFGAN 1268
>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
homologous cationchannel protein protein.
Length = 1027
Score = 50.8 bits (116), Expect = 1e-06
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 223 YPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPG----LHGKPYAD--PEIGDPNFEPLW 384
YP SN+ + V W+ +YNPP Y P + Y D E + +W
Sbjct: 773 YPESNILKISVNMVSKPWTVLVPRYNPPFYCKPAEDFPSDVQKYVDIATEQNVGELKRIW 832
Query: 385 NSIDGNISRVSYNGPYQI-VNGFPLNPLGRTGICGRGVLGRWGPN 516
S N S + +++ GFPLNP GRTG+ GRG R+G N
Sbjct: 833 RSRQANDVTSSNDKCWKLSAAGFPLNPNGRTGMAGRGNHPRFGAN 877
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 36.3 bits (80), Expect = 0.029
Identities = 26/67 (38%), Positives = 32/67 (47%)
Frame = +1
Query: 316 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 495
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 520 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 573
Query: 496 LGRWGPN 516
+G GPN
Sbjct: 574 VGYPGPN 580
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 36.3 bits (80), Expect = 0.029
Identities = 26/67 (38%), Positives = 32/67 (47%)
Frame = +1
Query: 316 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 495
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 777 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 830
Query: 496 LGRWGPN 516
+G GPN
Sbjct: 831 VGYPGPN 837
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/67 (38%), Positives = 31/67 (46%)
Frame = +1
Query: 316 FPGLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYNGPYQIVNGFPLNPLGRTGICGRGV 495
FPGLHG+P + G+ F N IDG+ +G Y G P P G TG G
Sbjct: 776 FPGLHGEPGMRGQQGEVGF----NGIDGDCGEPGLDG-YPGAPGAPGAP-GETGFGFPGQ 829
Query: 496 LGRWGPN 516
G GPN
Sbjct: 830 DGYPGPN 836
>Z81066-7|CAB02973.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 509 PHRPKTPRPQIPVRPRG 459
PHRP+ PRP P PRG
Sbjct: 52 PHRPRPPRPSRPTTPRG 68
>AL022289-6|CAA18377.1| 244|Caenorhabditis elegans Hypothetical
protein F17B5.5 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.82
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 509 PHRPKTPRPQIPVRPRG 459
PHRP+ PRP P PRG
Sbjct: 52 PHRPRPPRPSRPTTPRG 68
>Z74026-4|CAA98416.5| 774|Caenorhabditis elegans Hypothetical
protein B0240.2 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 825 SIPTVIHITLIYYFTFTKRIIYFFLPLYL 739
SI T+IH+ LI+ F K + YF + +++
Sbjct: 112 SISTIIHVFLIFTLIFPKMMTYFMISIHV 140
>Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -3
Query: 759 FFLPLYLSVRLNELRASSLNSLIAVSLTFSXRIHHTTWYSPLSSVTPFYSYKL*YRFIIY 580
F +PLY+SV N + A++ N LI + F + TT +S V S L +R +I
Sbjct: 170 FLIPLYISVAANLICAAAPNYLIFLLFRFISGV-ATTSFSMTGFVLCMESVSLEFRSLIP 228
Query: 579 THSHISIVKSF 547
+ IS V +
Sbjct: 229 VLTTISWVGGY 239
>AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = -3
Query: 759 FFLPLYLSVRLNELRASSLNSLIAVSLTFSXRIHHTTWYSPLSSVTPFYSYKL*YRFIIY 580
F +PLY+SV N + A++ N LI + F + TT +S V S L +R +I
Sbjct: 170 FLIPLYISVAANLICAAAPNYLIFLLFRFISGV-ATTSFSMTGFVLCMESVSLEFRSLIP 228
Query: 579 THSHISIVKSF 547
+ IS V +
Sbjct: 229 VLTTISWVGGY 239
>Z29095-7|CAA82352.2| 319|Caenorhabditis elegans Hypothetical
protein R10E11.7 protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = -3
Query: 768 IIYFFLPLYLSVRLNELRASSLNSLIAVSLTFSXRIHHTTWYSPLSSVTPFYSYKL*YRF 589
I+ + LP Y+S + + S+ ++I+V +TF+ H L ++
Sbjct: 62 IMVYILPYYMSDKTYKTYRDSIGAMISVGVTFNYL--HPMLTLILMTINRIAVVVSMQAS 119
Query: 588 IIYTHSHISIVKSFPTTYNWVCSMI 514
++T S I + SF T N+ C +I
Sbjct: 120 QLFTSSKIWLYTSFHMTANFACLII 144
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 5.8
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 181 MNSILTVHSKCVGFYPRSNLKRFPVPDDKVDWSTEYKQYNPPNYTFPGLHGKPYADP--E 354
+++I+ S+ VGFYPRS P+ + ST + + ++ G Y P
Sbjct: 2185 IDAIINGGSRSVGFYPRSTFASNPL-TPPLGSSTPTHRPHVTDFRSAVDAGSSYRRPIST 2243
Query: 355 IGDPNFEPLWNSIDGNISRVSYNGP 429
I D E +N+ +S++ N P
Sbjct: 2244 IEDSGMEVTFNTYPPEVSKLQQNTP 2268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,248,229
Number of Sequences: 27780
Number of extensions: 413412
Number of successful extensions: 1072
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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