Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P10
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 375 FKVRIT-DFWICIWFSM*AWKC 313
           FKV I  D W  IW ++  W C
Sbjct: 128 FKVWIFGDLWCSIWLAVDVWMC 149


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 423 WTISNCQWFPFKPSGTY 473
           W I+N  ++P+ P GT+
Sbjct: 219 WRITNNLFYPYPPYGTF 235


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +1

Query: 322 GLHGKPYADPEIGDPNFEPLWNSIDGNISRVSYN 423
           G++     DP   +  FE +   +   I ++ YN
Sbjct: 151 GVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 509 PHRPKTPRPQI 477
           PH P+TP PQ+
Sbjct: 467 PHPPETPGPQV 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,129
Number of Sequences: 438
Number of extensions: 5940
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)