Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P09
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.53 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.5  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   8.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 423 VPIIVVTIPGSYCIICISGILKFHEREWRTFS 328
           VP   V I  SYC  CISG   F    W  +S
Sbjct: 286 VPFFCVNIVTSYCKTCISG-RAFQVLTWLGYS 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 701 LTAYFIXSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 573
           L++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 188 LSSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 701 LTAYFIXSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 573
           L++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 188 LSSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 701 LTAYFIXSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 573
           L++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 188 LSSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 541 EYRVLVTGLPPSGSWQDL 594
           EY +   GLPPS +  DL
Sbjct: 440 EYEIPAHGLPPSATRYDL 457


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 IQDLFYKFGKVTFVDLKN 327
           I  LFY+FG +T V L +
Sbjct: 59  IVGLFYEFGLITHVKLSS 76


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 259 CPVVSFQHIYDTHFCCYC 206
           CP+  F+H   +H C  C
Sbjct: 265 CPIGKFKHEAGSHSCEAC 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,363
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)