Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P07
         (958 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E47FE5 Cluster: PREDICTED: similar to collagen X...    36   2.0  
UniRef50_Q26640 Cluster: Alpha2(IV)-like collagen; n=4; Strongyl...    34   6.2  
UniRef50_Q9L252 Cluster: Putative uncharacterized protein SCO266...    33   8.2  

>UniRef50_UPI0000E47FE5 Cluster: PREDICTED: similar to collagen XVIII;
            n=5; Strongylocentrotus purpuratus|Rep: PREDICTED:
            similar to collagen XVIII - Strongylocentrotus purpuratus
          Length = 1963

 Score = 35.5 bits (78), Expect = 2.0
 Identities = 21/65 (32%), Positives = 25/65 (38%)
 Frame = -2

Query: 804  PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
            P P G+ G  G PG  G+   P   G+   P  F G     G   P   T + E G P  
Sbjct: 1651 PGPPGMPGHPGEPGPKGEPGEPGREGQSGAP-GFDGRPGSRGPRGPQGPTGYGEQGPPGE 1709

Query: 624  GXXPG 610
               PG
Sbjct: 1710 PGTPG 1714


>UniRef50_Q26640 Cluster: Alpha2(IV)-like collagen; n=4;
            Strongylocentrotus purpuratus|Rep: Alpha2(IV)-like
            collagen - Strongylocentrotus purpuratus (Purple sea
            urchin)
          Length = 1747

 Score = 33.9 bits (74), Expect = 6.2
 Identities = 24/80 (30%), Positives = 28/80 (35%)
 Frame = -2

Query: 915  GXKGVPXKGXXXFPGXXXXXXXXXXXXQXGXKRXLRGPNPXGVXGXXGXPGXXGKXXXPX 736
            G  GVP  G   F G              G +  +  P P GV G  G PG  G    P 
Sbjct: 925  GVPGVP--GRKGFNGYNGRPGRGGSPGSLGPRGEIGDPGPGGVNGPPGPPGIIGVRGVPG 982

Query: 735  GGGKXXXPXXFXGFRXXGGE 676
              G    P  F GF+   G+
Sbjct: 983  DLG-DLGPSGFPGFQGRPGQ 1001


>UniRef50_Q9L252 Cluster: Putative uncharacterized protein SCO2669;
           n=1; Streptomyces coelicolor|Rep: Putative
           uncharacterized protein SCO2669 - Streptomyces
           coelicolor
          Length = 604

 Score = 33.5 bits (73), Expect = 8.2
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = -2

Query: 807 GPNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAP 631
           GPN  G  G  G P   G    P G G    P    G    GG   PN    F   G P
Sbjct: 218 GPNRPGGFGGPGSPDGPGGSGGPNGAGGFGGPGGPGGPNGPGGPGGPNGAGGFGGPGGP 276


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 463,343,762
Number of Sequences: 1657284
Number of extensions: 5488988
Number of successful extensions: 9196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8668
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)