Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P07
(958 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 31 4.7
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 31 4.7
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 31 4.7
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 31 6.2
U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 ... 31 6.2
U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 ... 31 6.2
M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen ... 31 6.2
M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen ... 31 6.2
M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein. 31 6.2
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 31 6.2
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 31 6.2
BC042075-1|AAH42075.1| 854|Homo sapiens COL22A1 protein protein. 31 6.2
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 31 6.2
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 31 6.2
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 31 6.2
AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha ... 31 6.2
AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha ... 31 6.2
AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha ... 31 6.2
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 31 6.2
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.7
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 611 PGXXPXFGAPNSXXRVHXFGAXSPPXXLKPXKXXGXXXFPPPXGXXXXPXFPGFPXXPXT 790
PG G P R G P P G P P G P FPGFP
Sbjct: 863 PGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGK 922
Query: 791 PXGLG 805
P G
Sbjct: 923 PGAEG 927
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 31.5 bits (68), Expect = 4.7
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 611 PGXXPXFGAPNSXXRVHXFGAXSPPXXLKPXKXXGXXXFPPPXGXXXXPXFPGFPXXPXT 790
PG G P R G P P G P P G P FPGFP
Sbjct: 863 PGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGK 922
Query: 791 PXGLG 805
P G
Sbjct: 923 PGAEG 927
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 31.5 bits (68), Expect = 4.7
Identities = 20/65 (30%), Positives = 20/65 (30%)
Frame = +2
Query: 611 PGXXPXFGAPNSXXRVHXFGAXSPPXXLKPXKXXGXXXFPPPXGXXXXPXFPGFPXXPXT 790
PG G P R G P P G P P G P FPGFP
Sbjct: 863 PGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGK 922
Query: 791 PXGLG 805
P G
Sbjct: 923 PGAEG 927
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 71 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 130
Query: 826 PXL 834
P +
Sbjct: 131 PMM 133
>U04520-2|AAC27816.1| 1685|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 624 GXXPG 610
G PG
Sbjct: 1190 G-NPG 1193
>U04520-1|AAF66217.2| 1691|Homo sapiens type IV collagen alpha 5 chain
protein.
Length = 1691
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 624 GXXPG 610
G PG
Sbjct: 1190 G-NPG 1193
>M63473-1|AAA51558.1| 762|Homo sapiens alpha-5 type IV collagen
protein.
Length = 762
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 207 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 266
Query: 624 GXXPG 610
G PG
Sbjct: 267 G-NPG 270
>M58526-1|AAA99480.1| 1604|Homo sapiens alpha-5 type IV collagen
protein.
Length = 1604
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1049 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1108
Query: 624 GXXPG 610
G PG
Sbjct: 1109 G-NPG 1112
>M31115-1|AAA52045.1| 772|Homo sapiens COL4A5 protein.
Length = 772
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 217 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 276
Query: 624 GXXPG 610
G PG
Sbjct: 277 G-NPG 280
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 71 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 130
Query: 826 PXL 834
P +
Sbjct: 131 PMM 133
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 71 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 130
Query: 826 PXL 834
P +
Sbjct: 131 PMM 133
>BC042075-1|AAH42075.1| 854|Homo sapiens COL22A1 protein protein.
Length = 854
Score = 31.1 bits (67), Expect = 6.2
Identities = 33/112 (29%), Positives = 35/112 (31%)
Frame = -2
Query: 939 AXGXXFXXGXKGVPXKGXXXFPGXXXXXXXXXXXXQXGXKRXLRGPNPXGVXGXXGXPGX 760
A G G G P G PG + G P P G G G PG
Sbjct: 168 APGHVGAPGPSGPP--GSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGL 225
Query: 759 XGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKXGXXPGSR 604
G P G GK P G R G P + GAP PGSR
Sbjct: 226 PG----PPGKGKDGEP----GLR--GSPGLPGPLGTKGDRGAPGIPGSPGSR 267
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 30 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 89
Query: 826 PXL 834
P +
Sbjct: 90 PMM 92
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 92 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 151
Query: 826 PXL 834
P +
Sbjct: 152 PMM 154
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 71 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 130
Query: 826 PXL 834
P +
Sbjct: 131 PMM 133
>AL035425-1|CAB90289.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 624 GXXPG 610
G PG
Sbjct: 1190 G-NPG 1193
>AL034369-4|CAA22267.2| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 624 GXXPG 610
G PG
Sbjct: 1190 G-NPG 1193
>AL031622-1|CAI43038.1| 1685|Homo sapiens collagen type IV alpha 5
protein.
Length = 1685
Score = 31.1 bits (67), Expect = 6.2
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 804 PNPXGVXGXXGXPGXXGKXXXPXGGGKXXXPXXFXGFRXXGGEXAPNXWTRFXELGAPKX 625
P P G+ G G PG G+ GGG P G + P + E G P
Sbjct: 1130 PGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGF 1189
Query: 624 GXXPG 610
G PG
Sbjct: 1190 G-NPG 1193
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 31.1 bits (67), Expect = 6.2
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +1
Query: 658 PSIWGXFPPXPSKTXKXXGGXXFSPXXXGPXFXXXSGXPPXSXXPL----GVGPPKGSLV 825
P PP PS G +P GP G PP P+ G+ PP G +
Sbjct: 71 PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHM 130
Query: 826 PXL 834
P +
Sbjct: 131 PMM 133
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,796,625
Number of Sequences: 237096
Number of extensions: 1230688
Number of successful extensions: 6545
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5974
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12658656216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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