Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P04
         (883 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   3.1  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   4.0  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   9.3  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   9.3  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = -3

Query: 254 IKNMHFVRKSAMK*QNTTKVPKRRRFQTYSRNIYCTA*KFGF*VYLSALE 105
           +K +  V+++A +   T +  + R     + ++YC+  +F +  YLS ++
Sbjct: 411 LKRLKRVKRAAYRHYQTRRCQRSRSIYFDTHSLYCSYNRFRYRRYLSKIQ 460


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 604  NPIRWNFKSSSLRVRSLRTHYTG 672
            NP+ WN+KS SL +  +    TG
Sbjct: 2752 NPLEWNWKSKSLWLGMIGGALTG 2774


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 604  NPIRWNFKSSSLRVRSLRTHYTG 672
            NP++W+++SSS  +  L    TG
Sbjct: 2762 NPLKWDWRSSSTWIGLLTGAVTG 2784


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 291 ITSVNIRTLWSKYGI*LLSSIEL 359
           +T+V IR ++  YG  +L  +EL
Sbjct: 653 LTAVKIRAIYGDYGEAILDDVEL 675


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,042
Number of Sequences: 2352
Number of extensions: 12016
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94680279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)